Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002811A_C01 KMC002811A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65226.1| putative translation initiation factor eIF-2, gam... 170 1e-41
ref|NP_171913.1| translation initiation factor eIF-2 gamma subun... 170 1e-41
pir||T04935 translation initiation factor eIF-2 gamma chain T9A2... 143 2e-33
ref|NP_001406.1| eukaryotic translation initiation factor 2, sub... 134 8e-31
ref|NP_036141.1| eukaryotic translation initiation factor 2, sub... 134 8e-31
>gb|AAM65226.1| putative translation initiation factor eIF-2, gamma subunit
[Arabidopsis thaliana]
Length = 465
Score = 170 bits (430), Expect = 1e-41
Identities = 82/96 (85%), Positives = 92/96 (95%)
Frame = -3
Query: 573 FLLRRLLGVRTKGSERQGKVTKLTKTEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCT 394
FLLRRLLGVRTKGSE+QGKV+KLTK E+LMLNIGSMSTGA+V+ VK DLAKLQLT+PVCT
Sbjct: 369 FLLRRLLGVRTKGSEKQGKVSKLTKGEILMLNIGSMSTGAKVVGVKVDLAKLQLTAPVCT 428
Query: 393 SKGEKIALSRRVEKHWRLIGWGQIQAGLTLDVPPAP 286
SKGEK+ALSRRVEKHWRLIGWGQIQAG T++VPP+P
Sbjct: 429 SKGEKVALSRRVEKHWRLIGWGQIQAGTTIEVPPSP 464
>ref|NP_171913.1| translation initiation factor eIF-2 gamma subunit, putative;
protein id: At1g04170.1, supported by cDNA: 37699.,
supported by cDNA: gi_13549161, supported by cDNA:
gi_20260147 [Arabidopsis thaliana]
gi|7428967|pir||T00956 translation initiation factor
eIF-2 gamma chain F20D22.6 - Arabidopsis thaliana
gi|3142294|gb|AAC16745.1| Strong similarity to
initiation factor eIF-2, gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene.
[Arabidopsis thaliana]
gi|13549162|gb|AAK29674.1|AF353097_1 protein synthesis
initiation factor eIF2 gamma [Arabidopsis thaliana]
gi|20260148|gb|AAM12972.1| strong similarity to
initiation factor eIF-2, gb|U37354 from S [Arabidopsis
thaliana] gi|25083696|gb|AAN72106.1| strong similarity
to initiation factor eIF-2, gb|U37354 from S
[Arabidopsis thaliana]
Length = 465
Score = 170 bits (430), Expect = 1e-41
Identities = 82/96 (85%), Positives = 92/96 (95%)
Frame = -3
Query: 573 FLLRRLLGVRTKGSERQGKVTKLTKTEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCT 394
FLLRRLLGVRTKGSE+QGKV+KLTK E+LMLNIGSMSTGA+V+ VK DLAKLQLT+PVCT
Sbjct: 369 FLLRRLLGVRTKGSEKQGKVSKLTKGEILMLNIGSMSTGAKVVGVKVDLAKLQLTAPVCT 428
Query: 393 SKGEKIALSRRVEKHWRLIGWGQIQAGLTLDVPPAP 286
SKGEK+ALSRRVEKHWRLIGWGQIQAG T++VPP+P
Sbjct: 429 SKGEKVALSRRVEKHWRLIGWGQIQAGTTIEVPPSP 464
>pir||T04935 translation initiation factor eIF-2 gamma chain T9A21.180 -
Arabidopsis thaliana gi|2832707|emb|CAA16805.1|
translation initiation factor eIF-2 gamma chain-like
protein [Arabidopsis thaliana]
gi|7268626|emb|CAB78835.1| translation initiation factor
eIF-2 gamma chain-like protein [Arabidopsis thaliana]
Length = 471
Score = 143 bits (360), Expect = 2e-33
Identities = 70/95 (73%), Positives = 82/95 (85%)
Frame = -3
Query: 570 LLRRLLGVRTKGSERQGKVTKLTKTEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTS 391
LL RL+GVRTK E+Q KV+KLTK E+LM+NIGSMSTGA+VI VK D+ KLQLTSPVCT+
Sbjct: 376 LLTRLIGVRTKEKEKQMKVSKLTKEEILMVNIGSMSTGAKVIGVKKDMVKLQLTSPVCTT 435
Query: 390 KGEKIALSRRVEKHWRLIGWGQIQAGLTLDVPPAP 286
GEK+ALSRRV++HWRLIG GQI AG T+DVPP P
Sbjct: 436 IGEKVALSRRVDRHWRLIGKGQIMAGTTIDVPPPP 470
>ref|NP_001406.1| eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa;
eukaryotic translation initiation factor 2G; eukaryotic
translation initiation factor 2, subunit 3 (gamma, 52kD)
[Homo sapiens] gi|729816|sp|P41091|IF2G_HUMAN Eukaryotic
translation initiation factor 2 subunit 3 (Eukaryotic
translation initiation factor 2 gamma subunit)
(eIF-2-gamma) gi|1082870|pir||A53048 translation
initiation factor eIF-2 gamma chain [validated] - human
gi|306900|gb|AAA19696.1| translation initiation factor
eIF-2 gamma subunit gi|18044760|gb|AAH19906.1|AAH19906
eukaryotic translation initiation factor 2, subunit 3
(gamma, 52kD) [Homo sapiens]
Length = 472
Score = 134 bits (337), Expect = 8e-31
Identities = 65/90 (72%), Positives = 77/90 (85%)
Frame = -3
Query: 573 FLLRRLLGVRTKGSERQGKVTKLTKTEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCT 394
FLLRRLLGVRT+G ++ KV KL+K E+LM+NIGS+STG RV AVK DL K+ LT+PVCT
Sbjct: 376 FLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCT 435
Query: 393 SKGEKIALSRRVEKHWRLIGWGQIQAGLTL 304
GEKIALSRRVEKHWRLIGWGQI+ G+T+
Sbjct: 436 EVGEKIALSRRVEKHWRLIGWGQIRRGVTI 465
>ref|NP_036141.1| eukaryotic translation initiation factor 2, subunit 3, structural
gene Y-linked; spermatogenesis Y [Mus musculus]
gi|7674081|sp|Q9Z0N2|IF2H_MOUSE Eukaryotic translation
initiation factor 2 subunit 3, Y-linked (Eukaryotic
translation initiation factor 2 gamma subunit, Y-linked)
(eIF-2-gamma Y) gi|3790165|emb|CAA07097.1| eIF2 gamma
[Mus musculus] gi|27882576|gb|AAH43656.1| similar to
eukaryotic translation initiation factor 2, subunit 3,
structural gene Y-linked [Mus musculus]
Length = 472
Score = 134 bits (337), Expect = 8e-31
Identities = 65/90 (72%), Positives = 77/90 (85%)
Frame = -3
Query: 573 FLLRRLLGVRTKGSERQGKVTKLTKTEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCT 394
FLLRRLLGVRT+G ++ KV KL+K E+LM+NIGS+STG RV AVK DL K+ LT+PVCT
Sbjct: 376 FLLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCT 435
Query: 393 SKGEKIALSRRVEKHWRLIGWGQIQAGLTL 304
GEKIALSRRVEKHWRLIGWGQI+ G+T+
Sbjct: 436 EVGEKIALSRRVEKHWRLIGWGQIRRGVTI 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,359,212
Number of Sequences: 1393205
Number of extensions: 9569244
Number of successful extensions: 22868
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 22161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22860
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
