Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002809A_C01 KMC002809A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67200.1| spore coat protein-like protein [Arabidopsis thal... 33 1.6
ref|NP_565008.1| spore coat protein-like protein; protein id: At... 32 3.5
gb|AAL32542.1| spore coat protein-like protein [Arabidopsis thal... 32 3.5
ref|NP_658880.1| hypothetical protein predicted by GeneMark [Bac... 32 5.9
ref|NP_524228.2| odd paired CG1133-PA gi|7296807|gb|AAF52084.1| ... 32 5.9
>gb|AAM67200.1| spore coat protein-like protein [Arabidopsis thaliana]
Length = 563
Score = 33.5 bits (75), Expect = 1.6
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Frame = +3
Query: 138 SQVPKVQGS*QHLTVNLNQPKHPSYIYRGLYLYVHHHKLIYGVS--------KDLIKGC* 293
+++PK+ S +NL + HP +I+ GL+ + L+ D +K C
Sbjct: 427 TEIPKIGTSEVWEVINLTEDNHPLHIHLGLFKVLEQTALVKSEEFIECMTKRNDAVK-CE 485
Query: 294 RTKY--GVFLRIMIHGTQDHRNLHKQLNLAHPVGIFIRSSQIHLRWNLGF---SRPGIL- 455
+KY G + +H + +N+ K + H I +R S IH + F PG +
Sbjct: 486 ISKYARGNKTAVTVH-ERGWKNVFKMMP-GHVTKILVRFSYIHSNESYSFDATQEPGYVY 543
Query: 456 --QVLDHINHSMHSHF 497
+LDH ++ M F
Sbjct: 544 HCHILDHEDNMMMRPF 559
>ref|NP_565008.1| spore coat protein-like protein; protein id: At1g71040.1, supported
by cDNA: 98973., supported by cDNA: gi_15292768,
supported by cDNA: gi_17064775, supported by cDNA:
gi_20259246 [Arabidopsis thaliana]
gi|15292769|gb|AAK92753.1| putative spore coat protein
[Arabidopsis thaliana] gi|20259247|gb|AAM14359.1|
putative spore coat protein [Arabidopsis thaliana]
Length = 581
Score = 32.3 bits (72), Expect = 3.5
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Frame = +3
Query: 138 SQVPKVQGS*QHLTVNLNQPKHPSYIYRGLYLYVHHHKLIYGVS--------KDLIKGC* 293
++ PK+ S +NL + HP +I+ GL+ + L+ D +K C
Sbjct: 445 TETPKIGTSEVWEVINLTEDNHPLHIHLGLFKVLEQTALVKSEEFIECMTKRNDAVK-CE 503
Query: 294 RTKY--GVFLRIMIHGTQDHRNLHKQLNLAHPVGIFIRSSQIHLRWNLGF---SRPGIL- 455
+KY G + +H + +N+ K + H I +R S IH + F PG +
Sbjct: 504 ISKYARGNKTAVTVH-ERGWKNVFKMMP-GHVTKILVRFSYIHSNESYSFDATQEPGYVY 561
Query: 456 --QVLDHINHSMHSHF 497
+LDH ++ M F
Sbjct: 562 HCHILDHEDNMMMRPF 577
>gb|AAL32542.1| spore coat protein-like protein [Arabidopsis thaliana]
Length = 581
Score = 32.3 bits (72), Expect = 3.5
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Frame = +3
Query: 138 SQVPKVQGS*QHLTVNLNQPKHPSYIYRGLYLYVHHHKLIYGVS--------KDLIKGC* 293
++ PK+ S +NL + HP +I+ GL+ + L+ D +K C
Sbjct: 445 TETPKIGTSEVWEVINLTEDNHPLHIHLGLFKVLEQTALVKSEEFIECMTKRNDAVK-CE 503
Query: 294 RTKY--GVFLRIMIHGTQDHRNLHKQLNLAHPVGIFIRSSQIHLRWNLGF---SRPGIL- 455
+KY G + +H + +N+ K + H I +R S IH + F PG +
Sbjct: 504 ISKYARGNKTAVTVH-ERGWKNVFKMMP-GHVTKILVRFSYIHSNESYSFDATQEPGYVY 561
Query: 456 --QVLDHINHSMHSHF 497
+LDH ++ M F
Sbjct: 562 HCHILDHEDNMMMRPF 577
>ref|NP_658880.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 96
Score = 31.6 bits (70), Expect = 5.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 73 HQISKANIWPTYGNIEFHD-LSNHKFQKY 156
+++ N+W Y +I ++D LSNH+F KY
Sbjct: 31 YKVCNENLWVVYFDISYYDDLSNHQFSKY 59
>ref|NP_524228.2| odd paired CG1133-PA gi|7296807|gb|AAF52084.1| CG1133-PA
[Drosophila melanogaster]
Length = 609
Score = 31.6 bits (70), Expect = 5.9
Identities = 25/108 (23%), Positives = 39/108 (35%), Gaps = 19/108 (17%)
Frame = +3
Query: 240 HHHKLIYGVSKDLIKGC*RTKYGVFLRIMIHGTQDHRNLHKQLNLAHPVGI--FIR---- 401
HHH++ G++ G +G F +H H H ++ HP G F+R
Sbjct: 138 HHHQMRMGMADAYAAGHPYNHHGNFPTAAVHHPVVHHPSHHAMSAMHPAGAGAFLRYMRH 197
Query: 402 ---------SSQIHLRW----NLGFSRPGILQVLDHINHSMHSHFLHL 506
++ W G PG + + + HSMH HL
Sbjct: 198 QPASSASSVKQEMQCLWIDPDQPGLVPPGGRKTCNKVFHSMHEIVTHL 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,515,505
Number of Sequences: 1393205
Number of extensions: 9586584
Number of successful extensions: 20507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 19791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20498
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
