Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002807A_C01 KMC002807A_c01
(227 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK61901.1|AF373595_10 EpsF* [Streptococcus thermophilus] 30 7.0
gb|AAN63512.1|AF410175_9 Eps1G [Streptococcus thermophilus] 30 7.0
emb|CAC81256.1| CpsH protein [Streptococcus thermophilus] 30 7.0
gb|AAM94588.1|AF448502_9 glycosyltransferase [Streptococcus ther... 30 7.0
ref|NP_013207.1| a large protein with a conserved N-terminal dom... 30 9.2
>gb|AAK61901.1|AF373595_10 EpsF* [Streptococcus thermophilus]
Length = 355
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 140 IFFVTIIHLSNFRTGSVFCGANYYYYYAPLVRYS 39
IFF++II LSN R+ + A Y Y+ P+V S
Sbjct: 173 IFFISIIVLSNIRSSNSIYRAFYAYFSGPVVLLS 206
>gb|AAN63512.1|AF410175_9 Eps1G [Streptococcus thermophilus]
Length = 406
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 140 IFFVTIIHLSNFRTGSVFCGANYYYYYAPLVRYS 39
IFF++II LSN R+ + A Y Y+ P+V S
Sbjct: 224 IFFISIIVLSNIRSSNSIYRAFYAYFSGPVVLLS 257
>emb|CAC81256.1| CpsH protein [Streptococcus thermophilus]
Length = 406
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 140 IFFVTIIHLSNFRTGSVFCGANYYYYYAPLVRYS 39
IFF++II LSN R+ + A Y Y+ P+V S
Sbjct: 224 IFFISIIVLSNIRSSNSIYRAFYAYFSGPVVLLS 257
>gb|AAM94588.1|AF448502_9 glycosyltransferase [Streptococcus thermophilus]
Length = 417
Score = 30.4 bits (67), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 140 IFFVTIIHLSNFRTGSVFCGANYYYYYAPLVRYS 39
IFF++II LSN R+ + A Y Y+ P+V S
Sbjct: 235 IFFISIIVLSNIRSSNSIYRAFYAYFSGPVVLLS 268
>ref|NP_013207.1| a large protein with a conserved N-terminal domain, a central AAA
ATPase domain (with similarity to dynein) composed of 6
tandem AAA protomers, and a C-terminal M-domain
containing MIDAS (Metal Ion Dependent Adhesion Site)
sequence motifs; Mdn1p [Saccharomyces cerevisiae]
gi|24211972|sp|Q12019|MDN1_YEAST Midasin
(MIDAS-containing protein) gi|2132688|pir||S64942
probable membrane protein YLR106c - yeast (Saccharomyces
cerevisiae) gi|1256854|gb|AAB67548.1| Ylr106cp
[Saccharomyces cerevisiae] gi|1360494|emb|CAA97671.1| ORF
YLR106c [Saccharomyces cerevisiae]
Length = 4910
Score = 30.0 bits (66), Expect = 9.2
Identities = 11/31 (35%), Positives = 19/31 (60%)
Frame = -1
Query: 140 IFFVTIIHLSNFRTGSVFCGANYYYYYAPLV 48
++ + + N +T S+FCG+N Y YY L+
Sbjct: 2521 LYNILTVMSENLKTESLFCGSNQYQYYWDLL 2551
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,793,244
Number of Sequences: 1393205
Number of extensions: 3093798
Number of successful extensions: 14644
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14082
length of database: 448,689,247
effective HSP length: 51
effective length of database: 377,635,792
effective search space used: 9063259008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
