Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002806A_C02 KMC002806A_c02
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45666 hypothetical protein F14P22.50 - Arabidopsis thalian... 40 0.014
ref|NP_567064.1| putative protein; protein id: At3g58460.1, supp... 40 0.014
gb|AAM65024.1| unknown [Arabidopsis thaliana] 40 0.014
>pir||T45666 hypothetical protein F14P22.50 - Arabidopsis thaliana
gi|6735363|emb|CAB68184.1| putative protein [Arabidopsis
thaliana]
Length = 411
Score = 40.4 bits (93), Expect = 0.014
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2
Query: 409 T*VEVALAAADGDLNVAVEILMSQQ 335
T VEVALAAAD DL VAVEILMSQQ
Sbjct: 386 TQVEVALAAADDDLTVAVEILMSQQ 410
>ref|NP_567064.1| putative protein; protein id: At3g58460.1, supported by cDNA:
35896. [Arabidopsis thaliana] gi|22531096|gb|AAM97052.1|
putative protein [Arabidopsis thaliana]
gi|23197956|gb|AAN15505.1| putative protein [Arabidopsis
thaliana]
Length = 403
Score = 40.4 bits (93), Expect = 0.014
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2
Query: 409 T*VEVALAAADGDLNVAVEILMSQQ 335
T VEVALAAAD DL VAVEILMSQQ
Sbjct: 378 TQVEVALAAADDDLTVAVEILMSQQ 402
>gb|AAM65024.1| unknown [Arabidopsis thaliana]
Length = 403
Score = 40.4 bits (93), Expect = 0.014
Identities = 22/25 (88%), Positives = 22/25 (88%)
Frame = -2
Query: 409 T*VEVALAAADGDLNVAVEILMSQQ 335
T VEVALAAAD DL VAVEILMSQQ
Sbjct: 378 TQVEVALAAADDDLTVAVEILMSQQ 402
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,346,953
Number of Sequences: 1393205
Number of extensions: 8630770
Number of successful extensions: 26798
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26776
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
