Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002804A_C01 KMC002804A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_220325.1| hypothetical protein [Chlamydia trachomatis] gi... 32 3.7
sp|P15581|NU4M_PARTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 gi|8... 32 4.9
ref|NP_059386.1| NADH dehydrogenase subunit 4 [Paramecium aurelia] 32 4.9
ref|NP_296568.1| conserved hypothetical protein [Chlamydia murid... 31 6.4
ref|NP_486519.1| transcriptional regulator [Nostoc sp. PCC 7120]... 31 8.3
>ref|NP_220325.1| hypothetical protein [Chlamydia trachomatis] gi|7468828|pir||A71468
hypothetical protein CT805 - Chlamydia trachomatis
(serotype D, strain UW3/Cx) gi|3329272|gb|AAC68401.1|
hypothetical protein [Chlamydia trachomatis]
Length = 450
Score = 32.0 bits (71), Expect = 3.7
Identities = 21/81 (25%), Positives = 45/81 (54%), Gaps = 3/81 (3%)
Frame = -1
Query: 328 VWVSVLLLGQCPVMCWFYRLVASWQVQSYDALFSGALVLAASYTVLP*Q---SSPSWEGL 158
V+ ++ +G+ +CW++ ++ + + ++ SGA+++AA T+L Q SPS +
Sbjct: 123 VFATIAKIGKQSPICWWWTIMIAAPLSAFFLKESGAMIIAA--TLLSKQFYKFSPSPKFC 180
Query: 157 FLYQALVFSGLNFSELVPATS 95
+ L+FS ++ S L + S
Sbjct: 181 YATMGLLFSNISISGLTSSFS 201
>sp|P15581|NU4M_PARTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 gi|84290|pir||S07754 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Paramecium tetraurelia mitochondrion
gi|13286|emb|CAA34033.1| ND4 protein (AA 1-474)
[Paramecium aurelia]
Length = 474
Score = 31.6 bits (70), Expect = 4.9
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = -2
Query: 360 VTSLNSVLVVMFGSQFYS*GSAQLCAGFIGWLPVGKFRVMMPCFQGLWSWQQVTQF 193
V L SVLVV FGS YS S F+ W +G V++ C ++S T F
Sbjct: 146 VLMLGSVLVVFFGS--YSKKSIHAVIYFVAWTQLGSLFVLLACLY-IYSLTNSTNF 198
>ref|NP_059386.1| NADH dehydrogenase subunit 4 [Paramecium aurelia]
Length = 512
Score = 31.6 bits (70), Expect = 4.9
Identities = 21/56 (37%), Positives = 27/56 (47%)
Frame = -2
Query: 360 VTSLNSVLVVMFGSQFYS*GSAQLCAGFIGWLPVGKFRVMMPCFQGLWSWQQVTQF 193
V L SVLVV FGS YS S F+ W +G V++ C ++S T F
Sbjct: 184 VLMLGSVLVVFFGS--YSKKSIHAVIYFVAWTQLGSLFVLLACLY-IYSLTNSTNF 236
>ref|NP_296568.1| conserved hypothetical protein [Chlamydia muridarum]
gi|11282294|pir||B81730 conserved hypothetical protein
TC0189 [imported] - Chlamydia muridarum (strain Nigg)
gi|7190227|gb|AAF39063.1| conserved hypothetical protein
[Chlamydia muridarum]
Length = 450
Score = 31.2 bits (69), Expect = 6.4
Identities = 21/81 (25%), Positives = 45/81 (54%), Gaps = 3/81 (3%)
Frame = -1
Query: 328 VWVSVLLLGQCPVMCWFYRLVASWQVQSYDALFSGALVLAASYTVLP---*QSSPSWEGL 158
++ SV +G+ +CW++ ++ + + ++ SGA+++AA T+L Q +PS +
Sbjct: 123 IFSSVAKIGKQSPICWWWTIMIAAPLSTFFLKESGAMIIAA--TLLSKHFYQLAPSPKFC 180
Query: 157 FLYQALVFSGLNFSELVPATS 95
+ L+FS ++ S L + S
Sbjct: 181 YATMGLLFSNISISGLTSSFS 201
>ref|NP_486519.1| transcriptional regulator [Nostoc sp. PCC 7120]
gi|25328903|pir||AH2115 transcription regulator alr2479
[imported] - Nostoc sp. (strain PCC 7120)
gi|17131571|dbj|BAB74178.1| transcriptional regulator
[Nostoc sp. PCC 7120]
Length = 476
Score = 30.8 bits (68), Expect = 8.3
Identities = 23/58 (39%), Positives = 31/58 (52%), Gaps = 3/58 (5%)
Frame = -1
Query: 229 SGALVLAASYTVLP*QS---SPSWEGLFLYQALVFSGLNFSELVPATSILCIVVDICP 65
+GAL LA S T P Q SP E +F A+ SGL FSEL ++L + + + P
Sbjct: 53 AGAL-LAVSLTSTPLQQAQLSPQEEAVFDGDAISGSGLRFSELTRPVNLLVMGMSVLP 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,425,999
Number of Sequences: 1393205
Number of extensions: 8889734
Number of successful extensions: 21694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21688
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
