Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002800A_C01 KMC002800A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42061.1| unknown protein [Arabidopsis thaliana] 68 1e-10
ref|NP_180382.1| hypothetical protein; protein id: At2g28150.1 [... 68 1e-10
gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum] 56 3e-07
ref|NP_200787.1| putative protein; protein id: At5g59790.1, supp... 54 1e-06
ref|NP_190197.1| putative protein; protein id: At3g46110.1 [Arab... 52 6e-06
>dbj|BAC42061.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 67.8 bits (164), Expect = 1e-10
Identities = 30/39 (76%), Positives = 35/39 (88%)
Frame = -1
Query: 583 RSYKNGFVWHDLCEDDKSLPSHGNKNVLKGSELFDKSNS 467
RSY+NGFVWHDL EDD LP++GN+ VLKGSELFD+SNS
Sbjct: 89 RSYRNGFVWHDLSEDDLILPANGNEYVLKGSELFDESNS 127
>ref|NP_180382.1| hypothetical protein; protein id: At2g28150.1 [Arabidopsis
thaliana] gi|25407956|pir||D84681 hypothetical protein
At2g28150 [imported] - Arabidopsis thaliana
gi|4063743|gb|AAC98451.1| hypothetical protein
[Arabidopsis thaliana]
Length = 541
Score = 67.8 bits (164), Expect = 1e-10
Identities = 30/39 (76%), Positives = 35/39 (88%)
Frame = -1
Query: 583 RSYKNGFVWHDLCEDDKSLPSHGNKNVLKGSELFDKSNS 467
RSY+NGFVWHDL EDD LP++GN+ VLKGSELFD+SNS
Sbjct: 97 RSYRNGFVWHDLSEDDLILPANGNEYVLKGSELFDESNS 135
>gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum]
Length = 433
Score = 56.2 bits (134), Expect = 3e-07
Identities = 24/37 (64%), Positives = 29/37 (77%)
Frame = -1
Query: 583 RSYKNGFVWHDLCEDDKSLPSHGNKNVLKGSELFDKS 473
RSY+NGFVWHDL E+D P+HG + VLKGSEL D +
Sbjct: 92 RSYRNGFVWHDLTENDFIYPAHGQEYVLKGSELLDSA 128
>ref|NP_200787.1| putative protein; protein id: At5g59790.1, supported by cDNA:
gi_20260479 [Arabidopsis thaliana]
gi|9757899|dbj|BAB08346.1|
gb|AAC98451.1~gene_id:MMN10.1~similar to unknown protein
[Arabidopsis thaliana] gi|20260480|gb|AAM13138.1|
unknown protein [Arabidopsis thaliana]
Length = 423
Score = 53.9 bits (128), Expect = 1e-06
Identities = 24/35 (68%), Positives = 26/35 (73%)
Frame = -1
Query: 583 RSYKNGFVWHDLCEDDKSLPSHGNKNVLKGSELFD 479
RSYKNGFVWHDL EDD P G + VLKGSE+ D
Sbjct: 102 RSYKNGFVWHDLSEDDFIFPVQGQEYVLKGSEVLD 136
>ref|NP_190197.1| putative protein; protein id: At3g46110.1 [Arabidopsis thaliana]
gi|11357390|pir||T49252 hypothetical protein F12M12.80 -
Arabidopsis thaliana gi|7798999|emb|CAB90938.1| putative
protein [Arabidopsis thaliana]
Length = 340
Score = 52.0 bits (123), Expect = 6e-06
Identities = 21/39 (53%), Positives = 29/39 (73%)
Frame = -1
Query: 583 RSYKNGFVWHDLCEDDKSLPSHGNKNVLKGSELFDKSNS 467
R+YKNGFVW+DL ++D P HG + VLKGS++ D N+
Sbjct: 75 RTYKNGFVWYDLSDEDFIFPVHGQEYVLKGSQILDLDNN 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,724,732
Number of Sequences: 1393205
Number of extensions: 10532524
Number of successful extensions: 24766
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 24127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24762
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
