Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002799A_C01 KMC002799A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172893.1| DNA-binding protein p24, putative; protein id: ... 136 3e-32
gb|AAF91282.1|AF233342_1 DNA-binding protein p24 [Solanum tubero... 121 2e-27
pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regul... 117 2e-25
pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regul... 117 2e-25
pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regul... 117 2e-25
>ref|NP_172893.1| DNA-binding protein p24, putative; protein id: At1g14410.1,
supported by cDNA: gi_12083311, supported by cDNA:
gi_13877786, supported by cDNA: gi_16323417 [Arabidopsis
thaliana] gi|25518621|pir||F86278 hypothetical protein
F14L17.18 - Arabidopsis thaliana
gi|7262683|gb|AAF43941.1|AC012188_18 Contains similarity
to a hypothetical protein from Arabidopsis thaliana
gb|AC002521.2. EST gb|AI995686 comes from this gene
gi|12083312|gb|AAG48815.1|AF332452_1 putative
DNA-binding protein p24 [Arabidopsis thaliana]
gi|13877787|gb|AAK43971.1|AF370156_1 putative
DNA-binding protein p24 [Arabidopsis thaliana]
gi|16323418|gb|AAL15203.1| putative DNA-binding protein
p24 [Arabidopsis thaliana]
Length = 263
Score = 136 bits (342), Expect(2) = 3e-32
Identities = 65/85 (76%), Positives = 74/85 (86%)
Frame = -2
Query: 614 GKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFIL 435
GKSDEGK+RKVLKVEPL DGSGH FNLSVQNKL NVDESI++P+T+AE AV S FNF+L
Sbjct: 168 GKSDEGKVRKVLKVEPLPDGSGHFFNLSVQNKLVNVDESIYIPITRAEFAVLISAFNFVL 227
Query: 434 PYLLGWNAFGNSIKPGVYSRVHNAS 360
PYL+GW+AF NSIKP SRV+NAS
Sbjct: 228 PYLIGWHAFANSIKPEETSRVNNAS 252
Score = 24.3 bits (51), Expect(2) = 3e-32
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -1
Query: 360 PRYGAEYEWN 331
P YG +YEWN
Sbjct: 253 PNYGGDYEWN 262
>gb|AAF91282.1|AF233342_1 DNA-binding protein p24 [Solanum tuberosum]
Length = 274
Score = 121 bits (304), Expect(2) = 2e-27
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = -2
Query: 614 GKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFIL 435
G+SDEG++RKVLKVEPL DGSGH FNLSVQNKL N+DE+I++PVTKAE AV S FNF++
Sbjct: 179 GRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVM 238
Query: 434 PYLLGWNAFGNSIKPGVYSRVHNAS 360
PYLLGW+ NS KP SR +NA+
Sbjct: 239 PYLLGWHTAVNSFKPEDASRSNNAN 263
Score = 22.3 bits (46), Expect(2) = 2e-27
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -1
Query: 360 PRYGAEYEWN 331
PR GAE EWN
Sbjct: 264 PRSGAELEWN 273
>pdb|1L3A|A Chain A, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 166
Score = 117 bits (292), Expect = 2e-25
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = -2
Query: 614 GKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFIL 435
G+SDEG++RKVLKVEPL DGSGH FNLSVQNKL N+DE+I++PVTKAE AV S FNF++
Sbjct: 91 GRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVM 150
Query: 434 PYLLGWNAFGNSIKP 390
PYLLGW+ NS KP
Sbjct: 151 PYLLGWHTAVNSFKP 165
>pdb|1L3A|D Chain D, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 171
Score = 117 bits (292), Expect = 2e-25
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = -2
Query: 614 GKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFIL 435
G+SDEG++RKVLKVEPL DGSGH FNLSVQNKL N+DE+I++PVTKAE AV S FNF++
Sbjct: 91 GRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVM 150
Query: 434 PYLLGWNAFGNSIKP 390
PYLLGW+ NS KP
Sbjct: 151 PYLLGWHTAVNSFKP 165
>pdb|1L3A|B Chain B, Structure Of The Plant Transcriptional Regulator Pbf-2
Length = 170
Score = 117 bits (292), Expect = 2e-25
Identities = 54/75 (72%), Positives = 64/75 (85%)
Frame = -2
Query: 614 GKSDEGKIRKVLKVEPLLDGSGHLFNLSVQNKLKNVDESIFVPVTKAELAVFNSLFNFIL 435
G+SDEG++RKVLKVEPL DGSGH FNLSVQNKL N+DE+I++PVTKAE AV S FNF++
Sbjct: 91 GRSDEGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFNFVM 150
Query: 434 PYLLGWNAFGNSIKP 390
PYLLGW+ NS KP
Sbjct: 151 PYLLGWHTAVNSFKP 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,681,182
Number of Sequences: 1393205
Number of extensions: 10865605
Number of successful extensions: 22798
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 22196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22791
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
