Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002797A_C01 KMC002797A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44102.2|AF370287_1 putative trehalose-6-phosphate synthase... 85 5e-16
ref|NP_177979.1| trehalose-6-phosphate synthase, putative; prote... 85 5e-16
emb|CAA69879.1| trehalose-6-phosphate synthase [Arabidopsis thal... 85 5e-16
pir||F86305 trehalose-6-phosphate synthase homolog [imported] - ... 54 2e-06
ref|NP_173143.1| trehalose-6-phosphate synthase, putative; prote... 54 2e-06
>gb|AAK44102.2|AF370287_1 putative trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 554
Score = 85.1 bits (209), Expect = 5e-16
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1
Query: 449 RKQTTMSAVRHDAPAPPEKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLME 270
RK + ++ + PEK SWNVLDLK ENYFSCAVGR RTNARY LGSPDDVV FL +
Sbjct: 487 RKSGSNHSLGNSRRPSPEKISWNVLDLKGENYFSCAVGRTRTNARYLLGSPDDVVCFLEK 546
Query: 269 LADASLYSSP 240
LAD + SSP
Sbjct: 547 LADTT--SSP 554
>ref|NP_177979.1| trehalose-6-phosphate synthase, putative; protein id: At1g78580.1
[Arabidopsis thaliana] gi|25347127|pir||D96814
trehalose-6-phosphate synthase [imported] - Arabidopsis
thaliana gi|4836875|gb|AAD30578.1|AC007260_9
trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 942
Score = 85.1 bits (209), Expect = 5e-16
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1
Query: 449 RKQTTMSAVRHDAPAPPEKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLME 270
RK + ++ + PEK SWNVLDLK ENYFSCAVGR RTNARY LGSPDDVV FL +
Sbjct: 875 RKSGSNHSLGNSRRPSPEKISWNVLDLKGENYFSCAVGRTRTNARYLLGSPDDVVCFLEK 934
Query: 269 LADASLYSSP 240
LAD + SSP
Sbjct: 935 LADTT--SSP 942
>emb|CAA69879.1| trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 942
Score = 85.1 bits (209), Expect = 5e-16
Identities = 45/70 (64%), Positives = 51/70 (72%)
Frame = -1
Query: 449 RKQTTMSAVRHDAPAPPEKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLME 270
RK + ++ + PEK SWNVLDLK ENYFSCAVGR RTNARY LGSPDDVV FL +
Sbjct: 875 RKSGSNHSLGNSRRPSPEKISWNVLDLKGENYFSCAVGRTRTNARYLLGSPDDVVCFLEK 934
Query: 269 LADASLYSSP 240
LAD + SSP
Sbjct: 935 LADTT--SSP 942
>pir||F86305 trehalose-6-phosphate synthase homolog [imported] - Arabidopsis
thaliana gi|5734770|gb|AAD50035.1|AC007651_30 Very
similar to trehalose-6-phosphate synthase [Arabidopsis
thaliana]
Length = 699
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -1
Query: 398 EKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLMELADAS 255
+K S NVLDLK+ENYFS A+G+ RT ARY + S +VV L +LA A+
Sbjct: 641 KKVSLNVLDLKQENYFSTAIGQARTKARYVVDSSHNVVNLLHKLAVAN 688
>ref|NP_173143.1| trehalose-6-phosphate synthase, putative; protein id: At1g17000.1
[Arabidopsis thaliana]
Length = 730
Score = 53.5 bits (127), Expect = 2e-06
Identities = 27/48 (56%), Positives = 35/48 (72%)
Frame = -1
Query: 398 EKTSWNVLDLKKENYFSCAVGRHRTNARYTLGSPDDVVGFLMELADAS 255
+K S NVLDLK+ENYFS A+G+ RT ARY + S +VV L +LA A+
Sbjct: 672 KKVSLNVLDLKQENYFSTAIGQARTKARYVVDSSHNVVNLLHKLAVAN 719
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,737,882
Number of Sequences: 1393205
Number of extensions: 11157590
Number of successful extensions: 34529
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 33101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34520
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
