Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002794A_C01 KMC002794A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566359.1| expressed protein; protein id: At3g09850.1, sup... 47 1e-04
ref|NP_594091.1| hypothetical protein [Schizosaccharomyces pombe... 39 0.062
ref|NP_181762.1| hypothetical protein; protein id: At2g42330.1 [... 37 0.18
ref|NP_173150.1| tuftelin-interacting-like protein; protein id: ... 37 0.23
gb|EAA28984.1| hypothetical protein [Neurospora crassa] 35 0.68
>ref|NP_566359.1| expressed protein; protein id: At3g09850.1, supported by cDNA:
gi_15982780 [Arabidopsis thaliana]
gi|6681334|gb|AAF23251.1|AC015985_9 hypothetical protein
[Arabidopsis thaliana] gi|15982781|gb|AAL09738.1|
AT3g09850/F8A24_10 [Arabidopsis thaliana]
gi|23308485|gb|AAN18212.1| At3g09850/F8A24_10
[Arabidopsis thaliana]
Length = 781
Score = 47.4 bits (111), Expect = 1e-04
Identities = 24/53 (45%), Positives = 34/53 (63%)
Frame = -1
Query: 475 IDLFEVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELGVLF 317
I FEV+ GFG KMM ++ + +G GL K +G+ +E + RPKSL LG+ F
Sbjct: 628 IGAFEVHTRGFGSKMMAKMGFIDGGGLGKDGKGIAQPIEAVQRPKSLGLGLDF 680
Score = 41.2 bits (95), Expect = 0.010
Identities = 19/47 (40%), Positives = 29/47 (61%)
Frame = -1
Query: 466 FEVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELG 326
FE + TGFG +MM R+ + EG GL + QG+ L + RP++ +G
Sbjct: 732 FEQHTTGFGSRMMARMGFVEGSGLGRESQGIVNPLVAVRRPRARGIG 778
>ref|NP_594091.1| hypothetical protein [Schizosaccharomyces pombe]
gi|11359115|pir||T50072 hypothetical protein
SPAC1486.03c [imported] - fission yeast
(Schizosaccharomyces pombe) gi|6523773|emb|CAB62413.1|
G-patch domain; putative septin interacting by similar
to D. melanogaster SIP1; no apparent S. cerevisiae
ortholog [Schizosaccharomyces pombe]
Length = 797
Score = 38.5 bits (88), Expect = 0.062
Identities = 17/53 (32%), Positives = 33/53 (62%)
Frame = -1
Query: 478 SIDLFEVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELGVL 320
+I + N TGFG KM++++ Y +G+GL + +G+ ++ RP+ + LG +
Sbjct: 107 NIPKMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRPERVGLGAV 159
>ref|NP_181762.1| hypothetical protein; protein id: At2g42330.1 [Arabidopsis
thaliana] gi|25354197|pir||F84852 hypothetical protein
At2g42330 [imported] - Arabidopsis thaliana
gi|4567305|gb|AAD23716.1| hypothetical protein
[Arabidopsis thaliana]
Length = 752
Score = 37.0 bits (84), Expect = 0.18
Identities = 19/52 (36%), Positives = 33/52 (62%)
Frame = -1
Query: 481 NSIDLFEVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELG 326
N + FE G G+K+++++ Y +G GL K+ QG+ +EV RPK++ +G
Sbjct: 94 NKKENFEKFSGGIGMKLLEKMGY-KGRGLGKNQQGIVAPIEVQLRPKNMGMG 144
>ref|NP_173150.1| tuftelin-interacting-like protein; protein id: At1g17070.1
[Arabidopsis thaliana] gi|25354195|pir||E86306 Similar
to tuftelin-interacting protein [imported] - Arabidopsis
thaliana gi|5734758|gb|AAD50023.1|AC007651_18 Similar to
tuftelin-interacting protein [Arabidopsis thaliana]
Length = 849
Score = 36.6 bits (83), Expect = 0.23
Identities = 18/52 (34%), Positives = 33/52 (62%)
Frame = -1
Query: 481 NSIDLFEVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELG 326
+ I FE + G G+K+++++ Y +G GL K+ QG+ +E RPK++ +G
Sbjct: 191 SDIGQFEKSTKGIGMKLLEKMGY-KGGGLGKNQQGIVAPIEAQLRPKNMGMG 241
>gb|EAA28984.1| hypothetical protein [Neurospora crassa]
Length = 962
Score = 35.0 bits (79), Expect = 0.68
Identities = 17/48 (35%), Positives = 26/48 (53%)
Frame = -1
Query: 463 EVNPTGFGLKMMDRIVYGEGEGLWKSCQGMTLTLEVIHRPKSLELGVL 320
+ N F +MM ++ Y EG+GL K QG + +E RP+ LG +
Sbjct: 239 KTNKMSFAARMMAKMGYQEGKGLGKEGQGRNVIIEANLRPQGAGLGAV 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,638,890
Number of Sequences: 1393205
Number of extensions: 12112021
Number of successful extensions: 29866
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 29069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29863
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
