Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002793A_C01 KMC002793A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_586615.1| hypothetical protein [Encephalitozoon cuniculi]... 34 1.3
ref|XP_060249.1| hypothetical protein XP_060249 [Homo sapiens] 32 5.0
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 32 6.5
>ref|NP_586615.1| hypothetical protein [Encephalitozoon cuniculi]
gi|19075170|ref|NP_586771.1| hypothetical protein
[Encephalitozoon cuniculi] gi|19068406|emb|CAD24874.1|
hypothetical protein [Encephalitozoon cuniculi]
gi|19068562|emb|CAD25030.1| hypothetical protein
[Encephalitozoon cuniculi]
Length = 231
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/58 (37%), Positives = 29/58 (49%)
Frame = -2
Query: 300 LICIHLLLCSESNSLHHLFPCLLIIV*SLSATIRIVAFLLPCPYFTLPPSPVHSFLLC 127
L+C LLC S++L L C+ ++ S SA + FLL C P S FLLC
Sbjct: 59 LLCCIQLLCPSSSALLFLLCCIRLLCPSSSALL----FLLCCIRLLCPSSSALLFLLC 112
>ref|XP_060249.1| hypothetical protein XP_060249 [Homo sapiens]
Length = 249
Score = 32.0 bits (71), Expect = 5.0
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 335 CISSCNGNCSLD*SAFISCSVLKVTAYTTCFHVY**LYNLYLQQSALLLFYSPVPTLL 162
C+ NG CS A++ +L V YTTC + +L ++LL P+ T+L
Sbjct: 57 CLQQLNGLCS---RAWLEAKLLAVFVYTTCLY--------FLTSHSILLMVQPLKTVL 103
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 31.6 bits (70), Expect = 6.5
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Frame = -2
Query: 411 VLCHRYVYIFMAKWIYC-------KTVQAKCLLH*QLQWKLL-FGLICIHLLLCSESNSL 256
+LC+ Y ++ + + C + C ++ L + L F L+C++ L SNSL
Sbjct: 95 ILCYIYFFLALCVCLPCFVSISSLQLCLILCYIYFFLAFVCLSFLLLCVYFFLAVVSNSL 154
Query: 255 HHLF-PCLLIIV*SL 214
HLF PC + + SL
Sbjct: 155 LHLFLPCFCVSISSL 169
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,863,729
Number of Sequences: 1393205
Number of extensions: 9769976
Number of successful extensions: 21637
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21624
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
