Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002791A_C01 KMC002791A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67351.1| unknown [Arabidopsis thaliana] 52 5e-06
pir||T52249 probable basic helix-loop-helix DNA binding protein ... 52 5e-06
pir||T04535 hypothetical protein F28J12.50 - Arabidopsis thalian... 50 2e-05
ref|NP_567553.1| teosinte branched1 - like protein; protein id: ... 50 2e-05
ref|NP_564351.1| expressed protein; protein id: At1g30210.1, sup... 49 5e-05
>gb|AAM67351.1| unknown [Arabidopsis thaliana]
Length = 174
Score = 51.6 bits (122), Expect = 5e-06
Identities = 40/83 (48%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Frame = -3
Query: 516 GTLQSNSP----SFL---QRFSPLDGSTVPFFLGGAAATAPAMENHHHHHNLQFSPVFDG 358
GTLQSNS SFL QRF + P FL GA PA ENHHH+H
Sbjct: 107 GTLQSNSTNQHQSFLANLQRFPTSESGGGPQFLFGAL---PA-ENHHHNH---------- 152
Query: 357 GSLQLYYGDGCRH-SDQKGKAKN 292
QLYY +GCR+ SD KGK KN
Sbjct: 153 -QFQLYYENGCRNSSDHKGKGKN 174
>pir||T52249 probable basic helix-loop-helix DNA binding protein TCP2 [imported]
- Arabidopsis thaliana (fragment)
gi|3328126|gb|AAC26786.1| putative basic
helix-loop-helix DNA binding protein TCP2 [Arabidopsis
thaliana]
Length = 335
Score = 51.6 bits (122), Expect = 5e-06
Identities = 40/83 (48%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Frame = -3
Query: 516 GTLQSNSP----SFL---QRFSPLDGSTVPFFLGGAAATAPAMENHHHHHNLQFSPVFDG 358
GTLQSNS SFL QRF + P FL GA PA ENHHH+H
Sbjct: 268 GTLQSNSTNQHQSFLANLQRFPTSESGGGPQFLFGAL---PA-ENHHHNH---------- 313
Query: 357 GSLQLYYGDGCRH-SDQKGKAKN 292
QLYY +GCR+ SD KGK KN
Sbjct: 314 -QFQLYYENGCRNSSDHKGKGKN 335
>pir||T04535 hypothetical protein F28J12.50 - Arabidopsis thaliana
gi|2832644|emb|CAA16719.1| teosinte branched1 - like
protein [Arabidopsis thaliana]
gi|7268632|emb|CAB78841.1| teosinte branched1-like
protein [Arabidopsis thaliana]
Length = 360
Score = 50.1 bits (118), Expect = 2e-05
Identities = 39/83 (46%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Frame = -3
Query: 516 GTLQSNSP----SFL---QRFSPLDGSTVPFFLGGAAATAPAMENHHHHHNLQFSPVFDG 358
GTLQSNS SFL QRF + P FL GA PA ENHHH+H Q
Sbjct: 293 GTLQSNSTNQHQSFLANLQRFPTSESGGGPQFLFGAL---PA-ENHHHNHQFQ------- 341
Query: 357 GSLQLYYGDGCRH-SDQKGKAKN 292
LYY +GCR+ S+ KGK KN
Sbjct: 342 ----LYYENGCRNSSEHKGKGKN 360
>ref|NP_567553.1| teosinte branched1 - like protein; protein id: At4g18390.1,
supported by cDNA: gi_14194128, supported by cDNA:
gi_14194170 [Arabidopsis thaliana]
gi|14194129|gb|AAK56259.1|AF367270_1 AT4g18390/F28J12_50
[Arabidopsis thaliana]
gi|14194171|gb|AAK56280.1|AF367292_1 AT4g18390/F28J12_50
[Arabidopsis thaliana] gi|20857274|gb|AAM26708.1|
AT4g18390/F28J12_50 [Arabidopsis thaliana]
Length = 365
Score = 50.1 bits (118), Expect = 2e-05
Identities = 39/83 (46%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Frame = -3
Query: 516 GTLQSNSP----SFL---QRFSPLDGSTVPFFLGGAAATAPAMENHHHHHNLQFSPVFDG 358
GTLQSNS SFL QRF + P FL GA PA ENHHH+H Q
Sbjct: 298 GTLQSNSTNQHQSFLANLQRFPTSESGGGPQFLFGAL---PA-ENHHHNHQFQ------- 346
Query: 357 GSLQLYYGDGCRH-SDQKGKAKN 292
LYY +GCR+ S+ KGK KN
Sbjct: 347 ----LYYENGCRNSSEHKGKGKN 365
>ref|NP_564351.1| expressed protein; protein id: At1g30210.1, supported by cDNA:
gi_14334669, supported by cDNA: gi_16323136 [Arabidopsis
thaliana] gi|25369273|pir||C86426 hypothetical protein
F12P21.11 - Arabidopsis thaliana
gi|12320852|gb|AAG50562.1|AC073506_4 hypothetical
protein [Arabidopsis thaliana]
gi|14334670|gb|AAK59513.1| unknown protein [Arabidopsis
thaliana] gi|16323137|gb|AAL15303.1| At1g30210/F12P21_11
[Arabidopsis thaliana] gi|21280875|gb|AAM44946.1|
unknown protein [Arabidopsis thaliana]
Length = 324
Score = 48.5 bits (114), Expect = 5e-05
Identities = 34/91 (37%), Positives = 42/91 (45%), Gaps = 17/91 (18%)
Frame = -3
Query: 516 GTLQSNSPSFL-----------------QRFSPLDGSTVPFFLGGAAATAPAMENHHHHH 388
GTLQSNS S SP+D ++ FF+ AT P ++ HH
Sbjct: 242 GTLQSNSQSLFLNNNNNITQRSSISSSSSSSSPMDSQSISFFM----ATPPPLD----HH 293
Query: 387 NLQFSPVFDGGSLQLYYGDGCRHSDQKGKAK 295
N Q FDG L LYYG+G R SD K K +
Sbjct: 294 NHQLPETFDG-RLYLYYGEGNRSSDDKAKER 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,727,579
Number of Sequences: 1393205
Number of extensions: 11481177
Number of successful extensions: 57238
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 39781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53267
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
