Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002790A_C01 KMC002790A_c01
(909 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB82452.1| CYP1 [Vigna radiata] 255 3e-81
pir||S54833 peptidylprolyl isomerase (EC 5.2.1.8) Cyp - kidney b... 254 9e-81
emb|CAC80550.1| cyclophilin [Ricinus communis] 256 1e-80
gb|AAL51087.1|AF456323_1 cyclophilin [Glycine max] 255 3e-80
pir||T50770 peptidylprolyl isomerase (EC 5.2.1.8) vcCyP [similar... 255 2e-79
>dbj|BAB82452.1| CYP1 [Vigna radiata]
Length = 172
Score = 255 bits (651), Expect(2) = 3e-81
Identities = 120/126 (95%), Positives = 121/126 (95%)
Frame = -2
Query: 881 MANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 702
M NPKVFFDMTIGGQPAG+IV ELFAD TPRTAENFRALCTGEKGVGRSGKPLHYKGS F
Sbjct: 1 MPNPKVFFDMTIGGQPAGKIVFELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSIF 60
Query: 701 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 522
HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
Query: 521 ICTAKT 504
ICT KT
Sbjct: 121 ICTTKT 126
Score = 70.1 bits (170), Expect(2) = 3e-81
Identities = 33/38 (86%), Positives = 35/38 (91%)
Frame = -3
Query: 508 RPEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCSRP 395
+ EWLDGKHVVFGQVVEGL+VVK IEKVGSSSGK SRP
Sbjct: 125 KTEWLDGKHVVFGQVVEGLNVVKEIEKVGSSSGKTSRP 162
>pir||S54833 peptidylprolyl isomerase (EC 5.2.1.8) Cyp - kidney bean
gi|829119|emb|CAA52414.1| cyclophilin [Phaseolus
vulgaris]
Length = 172
Score = 254 bits (648), Expect(2) = 9e-81
Identities = 119/126 (94%), Positives = 122/126 (96%)
Frame = -2
Query: 881 MANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 702
M NPKVFFDMTIGGQPAGRIV EL+ADVTPRTAENFRALCTGEKGVGRSGKP+H+KGS F
Sbjct: 1 MPNPKVFFDMTIGGQPAGRIVFELYADVTPRTAENFRALCTGEKGVGRSGKPVHFKGSIF 60
Query: 701 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 522
HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
Query: 521 ICTAKT 504
ICT KT
Sbjct: 121 ICTTKT 126
Score = 69.7 bits (169), Expect(2) = 9e-81
Identities = 32/38 (84%), Positives = 35/38 (91%)
Frame = -3
Query: 508 RPEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCSRP 395
+ EWLDGKHVVFGQVVEGLDVVK+IEKVGS SGK +RP
Sbjct: 125 KTEWLDGKHVVFGQVVEGLDVVKDIEKVGSGSGKTARP 162
>emb|CAC80550.1| cyclophilin [Ricinus communis]
Length = 173
Score = 256 bits (655), Expect(2) = 1e-80
Identities = 120/125 (96%), Positives = 122/125 (97%)
Frame = -2
Query: 878 ANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFH 699
ANPKVFFDMT+GG PAGRIVMELFAD TPRTAENFRALCTGEKGVGRSGKPLHYKGSSFH
Sbjct: 3 ANPKVFFDMTVGGAPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFH 62
Query: 698 RVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFI 519
RVIP FMCQGGDFTAGNGTGGESIYGAKFADENF+KKHTGPGILSMANAGPGTNGSQFFI
Sbjct: 63 RVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPGTNGSQFFI 122
Query: 518 CTAKT 504
CTAKT
Sbjct: 123 CTAKT 127
Score = 66.2 bits (160), Expect(2) = 1e-80
Identities = 29/38 (76%), Positives = 35/38 (91%)
Frame = -3
Query: 508 RPEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCSRP 395
+ EWLDGKHVVFG+VVEG+D+VK IEKVGSSSG+ S+P
Sbjct: 126 KTEWLDGKHVVFGRVVEGMDIVKAIEKVGSSSGRTSKP 163
>gb|AAL51087.1|AF456323_1 cyclophilin [Glycine max]
Length = 172
Score = 255 bits (652), Expect(2) = 3e-80
Identities = 121/126 (96%), Positives = 123/126 (97%)
Frame = -2
Query: 881 MANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 702
M NPKVFFDMTIGGQ AGRIVMEL+ADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF
Sbjct: 1 MPNPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 60
Query: 701 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 522
HRVIP+FMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61 HRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 120
Query: 521 ICTAKT 504
ICT KT
Sbjct: 121 ICTEKT 126
Score = 66.2 bits (160), Expect(2) = 3e-80
Identities = 29/38 (76%), Positives = 35/38 (91%)
Frame = -3
Query: 508 RPEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCSRP 395
+ EWLDGKHVVFGQV+EGL+VVK+IEKVGS SG+ S+P
Sbjct: 125 KTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKP 162
>pir||T50770 peptidylprolyl isomerase (EC 5.2.1.8) vcCyP [similarity] - fava
bean gi|3063396|dbj|BAA25755.1| vcCyP [Vicia faba]
Length = 171
Score = 255 bits (651), Expect(2) = 2e-79
Identities = 118/126 (93%), Positives = 124/126 (97%)
Frame = -2
Query: 881 MANPKVFFDMTIGGQPAGRIVMELFADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSF 702
M+NPKVFFDMT+GGQ AGRI+ ELFADVTPRTAENFRALCTGEKGVGRSGKPLH+KGSSF
Sbjct: 1 MSNPKVFFDMTVGGQNAGRIIFELFADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSSF 60
Query: 701 HRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFF 522
HRVIPNFMCQGGDFTAGNGTGGESIYG+KFADENF+KKHTGPGILSMANAGPGTNGSQFF
Sbjct: 61 HRVIPNFMCQGGDFTAGNGTGGESIYGSKFADENFIKKHTGPGILSMANAGPGTNGSQFF 120
Query: 521 ICTAKT 504
ICTAKT
Sbjct: 121 ICTAKT 126
Score = 64.3 bits (155), Expect(2) = 2e-79
Identities = 28/38 (73%), Positives = 35/38 (91%)
Frame = -3
Query: 508 RPEWLDGKHVVFGQVVEGLDVVKNIEKVGSSSGKCSRP 395
+ +WLDGKHVVFGQVV+GL+VV++IEKVGS SGK S+P
Sbjct: 125 KTDWLDGKHVVFGQVVDGLNVVRDIEKVGSGSGKTSKP 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 837,386,155
Number of Sequences: 1393205
Number of extensions: 21350587
Number of successful extensions: 89605
Number of sequences better than 10.0: 1096
Number of HSP's better than 10.0 without gapping: 73027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86993
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49641180728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
