Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002789A_C01 KMC002789A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arab... 55 2e-14
dbj|BAB64693.1| P0431G06.4 [Oryza sativa (japonica cultivar-group)] 45 5e-10
ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arab... 42 2e-09
ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42... 38 3e-06
pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidops... 36 2e-05
>ref|NP_197443.1| putative protein; protein id: At5g19420.1 [Arabidopsis thaliana]
Length = 1121
Score = 55.5 bits (132), Expect(2) = 2e-14
Identities = 24/33 (72%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
Frame = -2
Query: 463 WWAENRARVYELYHVRL-IDKSSIGVGSEELAH 368
WWAENR RVYE Y+VR+ +DKSS+GVGSE+L H
Sbjct: 1089 WWAENRGRVYEQYNVRIVVDKSSVGVGSEDLGH 1121
Score = 44.3 bits (103), Expect(2) = 2e-14
Identities = 22/27 (81%), Positives = 23/27 (84%)
Frame = -1
Query: 548 LTSLPGDVIDLKRVRFSRKRFSEKQAE 468
LT+L G DLKRVRFSRKRFSEKQAE
Sbjct: 1061 LTALAGGARDLKRVRFSRKRFSEKQAE 1087
>dbj|BAB64693.1| P0431G06.4 [Oryza sativa (japonica cultivar-group)]
Length = 1086
Score = 45.1 bits (105), Expect(2) = 5e-10
Identities = 22/27 (81%), Positives = 23/27 (84%)
Frame = -1
Query: 548 LTSLPGDVIDLKRVRFSRKRFSEKQAE 468
LT+LPG DLKRVRFSRKRFSE QAE
Sbjct: 1027 LTALPGGARDLKRVRFSRKRFSETQAE 1053
Score = 40.0 bits (92), Expect(2) = 5e-10
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = -2
Query: 463 WWAENRARVYELYHVRLIDKSSIGVGSE 380
WW ENR RVY+ Y+VR+++KS+ + +E
Sbjct: 1055 WWQENRTRVYQHYNVRMVEKSASSIDNE 1082
>ref|NP_568268.1| putative protein; protein id: At5g12350.1 [Arabidopsis thaliana]
gi|14586365|emb|CAC42896.1| putative protein [Arabidopsis
thaliana]
Length = 1062
Score = 41.6 bits (96), Expect(2) = 2e-09
Identities = 15/22 (68%), Positives = 20/22 (90%)
Frame = -2
Query: 463 WWAENRARVYELYHVRLIDKSS 398
WWA+NR RVYE Y+VR++DK+S
Sbjct: 1036 WWADNRGRVYEQYNVRMVDKAS 1057
Score = 41.2 bits (95), Expect(2) = 2e-09
Identities = 21/27 (77%), Positives = 22/27 (80%)
Frame = -1
Query: 548 LTSLPGDVIDLKRVRFSRKRFSEKQAE 468
LT+L G DLKRVRFSRKRFSE QAE
Sbjct: 1008 LTALAGGARDLKRVRFSRKRFSEIQAE 1034
>ref|NP_199029.1| TMV resistance protein-like; protein id: At5g42140.1 [Arabidopsis
thaliana] gi|9757959|dbj|BAB08447.1| TMV resistance
protein-like [Arabidopsis thaliana]
Length = 1073
Score = 38.1 bits (87), Expect(2) = 3e-06
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -2
Query: 463 WWAENRARVYELYHVRLIDKSSI 395
WW+ENR RVYE Y++R D+SS+
Sbjct: 1041 WWSENRERVYEKYNIRGTDRSSV 1063
Score = 34.3 bits (77), Expect(2) = 3e-06
Identities = 17/27 (62%), Positives = 20/27 (73%)
Frame = -1
Query: 548 LTSLPGDVIDLKRVRFSRKRFSEKQAE 468
L +L DLKRVRFSR+RF E+QAE
Sbjct: 1013 LLALGDGTRDLKRVRFSRRRFREQQAE 1039
>pir||D96798 hypothetical protein F22K20.5 [imported] - Arabidopsis thaliana
gi|2829910|gb|AAC00618.1| Unknown protein, contains
regulator of chromosome condensation motifs [Arabidopsis
thaliana]
Length = 1108
Score = 36.2 bits (82), Expect(2) = 2e-05
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -2
Query: 463 WWAENRARVYELYHVRLIDKSS 398
WW+ENR +VYE Y+VR+ +KS+
Sbjct: 1070 WWSENREKVYEKYNVRVSEKST 1091
Score = 33.1 bits (74), Expect(2) = 2e-05
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -1
Query: 548 LTSLPGDVIDLKRVRFSRKRFSEKQAE 468
L +L DL+RVRFSR+RF E QAE
Sbjct: 1042 LVALHDGTRDLRRVRFSRRRFGEHQAE 1068
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,303,556
Number of Sequences: 1393205
Number of extensions: 9435237
Number of successful extensions: 25908
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 23903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25789
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
