Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002788A_C01 KMC002788A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC85922.1| putative protein phosphatase 2A B'teta subunit [... 40 0.012
ref|NP_567464.1| Expressed protein; protein id: At4g15415.1, sup... 39 0.027
gb|AAM10385.1| AT4g15410/dl3750w [Arabidopsis thaliana] 39 0.027
pir||F71418 hypothetical protein - Arabidopsis thaliana gi|22448... 39 0.027
emb|CAC85921.1| putative protein phosphatase 2A B'zeta subunit [... 38 0.060
>emb|CAC85922.1| putative protein phosphatase 2A B'teta subunit [Oryza sativa
(japonica cultivar-group)]
Length = 516
Score = 40.4 bits (93), Expect = 0.012
Identities = 20/42 (47%), Positives = 26/42 (61%)
Frame = -1
Query: 515 DEAQEKDLKSMREARWKRLEEMGGMQAATNEPVLVSPRTASH 390
DEA+E L+S REA WKRLEE+ + ++EP V P H
Sbjct: 476 DEAKETALRSKREATWKRLEEIASSKTISSEPA-VPPEATVH 516
>ref|NP_567464.1| Expressed protein; protein id: At4g15415.1, supported by cDNA:
gi_20147342, supported by cDNA: gi_2160693 [Arabidopsis
thaliana] gi|2160694|gb|AAB58902.1| B' regulatory
subunit of PP2A [Arabidopsis thaliana]
Length = 522
Score = 39.3 bits (90), Expect = 0.027
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = -1
Query: 515 DEAQEKDLKSMREARWKRLEEMGGMQAATNEPVLVSPRTAS 393
DEA E ++ + REA WK LEE+ ++ +NE VLV PR +S
Sbjct: 471 DEANETEVVAKREATWKLLEELAASKSVSNEAVLV-PRFSS 510
>gb|AAM10385.1| AT4g15410/dl3750w [Arabidopsis thaliana]
Length = 522
Score = 39.3 bits (90), Expect = 0.027
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = -1
Query: 515 DEAQEKDLKSMREARWKRLEEMGGMQAATNEPVLVSPRTAS 393
DEA E ++ + REA WK LEE+ ++ +NE VLV PR +S
Sbjct: 471 DEANETEVVAKREATWKLLEELAASKSVSNEAVLV-PRFSS 510
>pir||F71418 hypothetical protein - Arabidopsis thaliana
gi|2244898|emb|CAB10320.1| phosphatase like protein
[Arabidopsis thaliana] gi|7268288|emb|CAB78583.1|
phosphatase like protein [Arabidopsis thaliana]
Length = 969
Score = 39.3 bits (90), Expect = 0.027
Identities = 20/41 (48%), Positives = 28/41 (67%)
Frame = -1
Query: 515 DEAQEKDLKSMREARWKRLEEMGGMQAATNEPVLVSPRTAS 393
DEA E ++ + REA WK LEE+ ++ +NE VLV PR +S
Sbjct: 918 DEANETEVVAKREATWKLLEELAASKSVSNEAVLV-PRFSS 957
>emb|CAC85921.1| putative protein phosphatase 2A B'zeta subunit [Oryza sativa
(japonica cultivar-group)]
Length = 517
Score = 38.1 bits (87), Expect = 0.060
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = -1
Query: 515 DEAQEKDLKSMREARWKRLEEMGGMQAATNEPVLVS---PRTAS 393
++A+EK+ K +E WKRLEEM +A + VLVS PR +S
Sbjct: 472 EKAKEKETKLKQEVAWKRLEEMASAKATSGAAVLVSRTLPRQSS 515
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,160,259
Number of Sequences: 1393205
Number of extensions: 9450054
Number of successful extensions: 26575
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 25978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26574
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
