Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002785A_C01 KMC002785A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180936.1| 30S ribosomal protein S5; protein id: At2g33800... 207 7e-60
emb|CAA63650.1| ribosomal protein S5 [Spinacia oleracea] 201 1e-56
gb|AAO37485.1| putative ribosomal protein [Oryza sativa (japonic... 181 2e-50
gb|AAO73241.1| putative ribosomal protein S5 [Oryza sativa (japo... 177 4e-49
gb|ZP_00106123.1| hypothetical protein [Nostoc punctiforme] 145 1e-35
>ref|NP_180936.1| 30S ribosomal protein S5; protein id: At2g33800.1, supported by
cDNA: 38063., supported by cDNA: gi_15450885, supported
by cDNA: gi_20259881 [Arabidopsis thaliana]
gi|25408312|pir||G84749 30S ribosomal protein S5
[imported] - Arabidopsis thaliana
gi|1707008|gb|AAC69132.1| 30S ribosomal protein S5
[Arabidopsis thaliana] gi|15450886|gb|AAK96714.1| 30S
ribosomal protein S5 [Arabidopsis thaliana]
gi|20259882|gb|AAM13288.1| 30S ribosomal protein S5
[Arabidopsis thaliana] gi|21593322|gb|AAM65271.1| 30S
ribosomal protein S5 [Arabidopsis thaliana]
Length = 303
Score = 207 bits (527), Expect(2) = 7e-60
Identities = 105/118 (88%), Positives = 112/118 (93%)
Frame = -1
Query: 699 QLKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPHRSDGD 520
QLKFRA+VVVGDK+GNVGVG KAKEVVAAVQKSA++ARRNIV VPMTKY TFPHRS+GD
Sbjct: 166 QLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGD 225
Query: 519 YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVPE 346
YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AV +
Sbjct: 226 YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQ 283
Score = 45.8 bits (107), Expect(2) = 7e-60
Identities = 20/26 (76%), Positives = 23/26 (87%)
Frame = -2
Query: 362 LLLCQKMRQFREVAEERGIPMEELWK 285
L Q+MRQFR+VA+ERGIPMEELWK
Sbjct: 278 LAAVQQMRQFRDVAQERGIPMEELWK 303
>emb|CAA63650.1| ribosomal protein S5 [Spinacia oleracea]
Length = 308
Score = 201 bits (512), Expect(2) = 1e-56
Identities = 99/115 (86%), Positives = 112/115 (97%)
Frame = -1
Query: 696 LKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPHRSDGDY 517
++FRA+VVVGDKKG VGVGVGKAKEVV+AVQK+AV+ARRNI++VPMTKYLTFPHR++ DY
Sbjct: 172 MRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADY 231
Query: 516 GAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAV 352
GAA+VMLRPA+PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAV
Sbjct: 232 GAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAV 286
Score = 40.8 bits (94), Expect(2) = 1e-56
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = -2
Query: 362 LLLCQKMRQFREVAEERGIPMEELWK 285
++ Q MRQF +VA +RGIPMEELWK
Sbjct: 283 IVAVQTMRQFSDVARDRGIPMEELWK 308
>gb|AAO37485.1| putative ribosomal protein [Oryza sativa (japonica cultivar-group)]
Length = 326
Score = 181 bits (460), Expect(2) = 2e-50
Identities = 89/115 (77%), Positives = 102/115 (88%)
Frame = -1
Query: 699 QLKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPHRSDGD 520
QL FRA+VVVGD KG+VGVGVGKAKEV A+ K+A+N RRN+V+VP+TKY TFPHR+D D
Sbjct: 189 QLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTVPLTKYSTFPHRADAD 248
Query: 519 YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVA 355
YGAA+VMLRPA PG+GVIAGGAVR+VLEMAGVENALGKQL S N LNNARAT+ A
Sbjct: 249 YGAARVMLRPACPGSGVIAGGAVRVVLEMAGVENALGKQLRSKNPLNNARATIKA 303
Score = 40.4 bits (93), Expect(2) = 2e-50
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -2
Query: 350 QKMRQFREVAEERGIPMEELWK 285
Q MRQF++VA ERG+PME+LWK
Sbjct: 305 QMMRQFKDVAAERGLPMEQLWK 326
>gb|AAO73241.1| putative ribosomal protein S5 [Oryza sativa (japonica
cultivar-group)]
Length = 327
Score = 177 bits (448), Expect(2) = 4e-49
Identities = 89/116 (76%), Positives = 102/116 (87%), Gaps = 1/116 (0%)
Frame = -1
Query: 699 QLKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPH-RSDG 523
QL FRA+VVVGD KG+VGVGVGKAKEV A+ K+A+N RRN+V+VP+TKY TFPH R+D
Sbjct: 189 QLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNLVTVPLTKYSTFPHSRADA 248
Query: 522 DYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVA 355
DYGAA+VMLRPA PG+GVIAGGAVR+VLEMAGVENALGKQL S N LNNARAT+ A
Sbjct: 249 DYGAARVMLRPACPGSGVIAGGAVRVVLEMAGVENALGKQLRSKNPLNNARATIKA 304
Score = 40.4 bits (93), Expect(2) = 4e-49
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = -2
Query: 350 QKMRQFREVAEERGIPMEELWK 285
Q MRQF++VA ERG+PME+LWK
Sbjct: 306 QMMRQFKDVAAERGLPMEQLWK 327
>gb|ZP_00106123.1| hypothetical protein [Nostoc punctiforme]
Length = 175
Score = 145 bits (367), Expect(2) = 1e-35
Identities = 71/122 (58%), Positives = 94/122 (76%)
Frame = -1
Query: 699 QLKFRAVVVVGDKKGNVGVGVGKAKEVVAAVQKSAVNARRNIVSVPMTKYLTFPHRSDGD 520
+L FRA+VVVG+++G VGVGVGKA +V+ AV+K + +++++ +P+TK + PH DG
Sbjct: 38 KLSFRAIVVVGNERGQVGVGVGKASDVIGAVKKGVADGKKHLIDIPITKSNSIPHPIDGV 97
Query: 519 YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVPENE 340
G AKV++RPA+PGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+
Sbjct: 98 GGGAKVIMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLR 157
Query: 339 TV 334
T+
Sbjct: 158 TL 159
Score = 26.2 bits (56), Expect(2) = 1e-35
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 344 MRQFREVAEERGIPMEELW 288
+R EVAE+RGIP++ L+
Sbjct: 156 LRTLSEVAEDRGIPIQNLY 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,044,224
Number of Sequences: 1393205
Number of extensions: 14194617
Number of successful extensions: 55461
Number of sequences better than 10.0: 383
Number of HSP's better than 10.0 without gapping: 49610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54498
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
