Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002783A_C02 KMC002783A_c02
(911 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568293.1| expressed protein; protein id: At5g14030.1, sup... 257 2e-67
dbj|BAB08282.1| gene_id:MUA22.2~similar to unknown protein~sp|P2... 249 5e-65
dbj|BAB62640.1| contains ESTs AU069042(C51821),D23969(R0687),AU0... 236 3e-61
gb|AAG03105.1|AC073405_21 rice EST BE041002 corresponds to a reg... 212 5e-54
sp|P23438|SSRB_CANFA TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT... 68 2e-10
>ref|NP_568293.1| expressed protein; protein id: At5g14030.1, supported by cDNA:
16313., supported by cDNA: gi_14517445 [Arabidopsis
thaliana] gi|14517446|gb|AAK62613.1| AT5g14030/MUA22_2
[Arabidopsis thaliana] gi|21553748|gb|AAM62841.1|
unknown [Arabidopsis thaliana]
gi|22136544|gb|AAM91058.1| AT5g14030/MUA22_2
[Arabidopsis thaliana]
Length = 195
Score = 257 bits (656), Expect = 2e-67
Identities = 125/192 (65%), Positives = 159/192 (82%)
Frame = -3
Query: 852 ISKALILLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSST 673
++ A +L+S +A +L S + ++S+VPF+V HKKA+LNRLKSGAERVSVS DIYNQGSS+
Sbjct: 3 VAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSS 62
Query: 672 AYDISLADDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFR 493
AYD++L D++W F +++G+TSKSWERLDAGGILSH+ ELEAK KGVF G PAV+ FR
Sbjct: 63 AYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFR 122
Query: 492 IPTKSALQEAFSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLFSVISIMVLFVYLVATP 313
IPTK ALQEA+STP+LPLD+LAD+PP K + AKRLLAKYGSL SVIS++V F+YLVATP
Sbjct: 123 IPTKPALQEAYSTPLLPLDILADKPPTKPLDVAKRLLAKYGSLVSVISMVVCFIYLVATP 182
Query: 312 SKSGAKGSKKKR 277
+ +K S KK+
Sbjct: 183 KSNVSKASSKKK 194
>dbj|BAB08282.1| gene_id:MUA22.2~similar to unknown protein~sp|P23438 [Arabidopsis
thaliana]
Length = 193
Score = 249 bits (635), Expect = 5e-65
Identities = 123/192 (64%), Positives = 157/192 (81%)
Frame = -3
Query: 852 ISKALILLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSST 673
++ A +L+S +A +L S + ++S+VPF+V HKKA+LNRLKSGAERVSVS DIYNQGSS+
Sbjct: 3 VAVAKLLISAMAVFMLVSASFATSEVPFMVVHKKATLNRLKSGAERVSVSYDIYNQGSSS 62
Query: 672 AYDISLADDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFR 493
AYD++L D++W F +++G+TSKSWERLDAGGILSH+ ELEAK KGVF G PAV+ FR
Sbjct: 63 AYDVTLTDNSWDKKTFEVVNGNTSKSWERLDAGGILSHSIELEAKVKGVFYGAPAVVTFR 122
Query: 492 IPTKSALQEAFSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLFSVISIMVLFVYLVATP 313
IPTK ALQEA+STP+LPLD+LAD+PP K + RLLAKYGSL SVIS++V F+YLVATP
Sbjct: 123 IPTKPALQEAYSTPLLPLDILADKPPTKPLD--VRLLAKYGSLVSVISMVVCFIYLVATP 180
Query: 312 SKSGAKGSKKKR 277
+ +K S KK+
Sbjct: 181 KSNVSKASSKKK 192
>dbj|BAB62640.1| contains ESTs
AU069042(C51821),D23969(R0687),AU031707(R0687)~similar
to Oryza sativa chromosome 5, AAG03105.1~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|15408865|dbj|BAB64254.1| P0672D08.29 [Oryza sativa
(japonica cultivar-group)] gi|20804445|dbj|BAB92142.1|
contains ESTs
AU069042(C51821),D23969(R0687),AU031707(R0687)~similar
to Oryza sativa chromosome 5, AAG03105.1~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 188
Score = 236 bits (603), Expect = 3e-61
Identities = 118/185 (63%), Positives = 149/185 (79%), Gaps = 1/185 (0%)
Frame = -3
Query: 828 SIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSSTAYDISLAD 649
SI+ LLL + AS+S+D PF+VAHKK SL+R K G ER++VS+D+YNQGS+TAYD+S+ D
Sbjct: 6 SILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYDVSIND 65
Query: 648 DTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFRIPTKSALQ 469
DTWP + F ++SG SK+ ERLD G SH F LE K +G F G PAVI +R+PTK+ALQ
Sbjct: 66 DTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPTKAALQ 125
Query: 468 EAFSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLFSVISIMVLFVYLVATPSK-SGAKG 292
EA+STPIL LDVLA+RPPEKKFEW RL+AKYGSL SV+ ++ +F+YLVA+PSK SGAK
Sbjct: 126 EAYSTPILALDVLAERPPEKKFEW--RLVAKYGSLVSVVGLVGVFIYLVASPSKSSGAKA 183
Query: 291 SKKKR 277
SKK+R
Sbjct: 184 SKKRR 188
>gb|AAG03105.1|AC073405_21 rice EST BE041002 corresponds to a region of the predicated gene;
unknown protein [Oryza sativa]
Length = 192
Score = 212 bits (540), Expect = 5e-54
Identities = 105/187 (56%), Positives = 144/187 (76%), Gaps = 1/187 (0%)
Frame = -3
Query: 834 LLSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSSTAYDISL 655
LL ++ LL+ A++ D PF+VA KK +L+R G ER++V++++YNQGS+TAYD+SL
Sbjct: 8 LLFLLLLLLVPFAAAAGQDAPFVVAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSL 67
Query: 654 ADDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFRIPTKSA 475
DD+WP + F +ISG+TSK E+LD G SH F LE K +G F G PA+I +R+PTK+A
Sbjct: 68 NDDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAA 127
Query: 474 LQEAFSTPILPLDVLADRPPEKKFEWAKRLLAKYGSLFSVISIMVLFVYLVATPSKS-GA 298
LQEA+STP+ PLD+LA+RPP++KFE RL+ KYGSL SV+S + +F+YLVA+PSKS A
Sbjct: 128 LQEAYSTPMFPLDILAERPPQQKFE--LRLVGKYGSLVSVVSFVGVFIYLVASPSKSTAA 185
Query: 297 KGSKKKR 277
KGSKK+R
Sbjct: 186 KGSKKRR 192
>sp|P23438|SSRB_CANFA TRANSLOCON-ASSOCIATED PROTEIN, BETA SUBUNIT PRECURSOR (TRAP-BETA)
(SIGNAL SEQUENCE RECEPTOR BETA SUBUNIT) (SSR-BETA)
(GP25H) gi|108075|pir||A36679 signal sequence receptor
beta chain precursor - dog gi|846|emb|CAA37661.1|
glycoprotein 25H [Canis familiaris]
gi|937|emb|CAA37609.1| signal sequence receptor beta
subunit [Canis familiaris] gi|227468|prf||1704250A
signal sequence receptor beta
Length = 183
Score = 67.8 bits (164), Expect = 2e-10
Identities = 42/151 (27%), Positives = 75/151 (48%), Gaps = 5/151 (3%)
Frame = -3
Query: 831 LSIVASLLLCSHASSSSDVPFIVAHKKASLNRLKSGAERVSVSIDIYNQGSSTAYDISLA 652
+ ++AS+LL A S ++ + K+ LNR +++ +IYN GSS A D+ L+
Sbjct: 1 MRLLASVLLALFAVSHAEEGARLLASKSLLNRYAVEGRDLTLQYNIYNVGSSAALDVELS 60
Query: 651 DDTWPSDLFSIISGSTSKSWERLDAGGILSHTFELEAKTKGVFSGQPAVIKFRIPTKSAL 472
DD++P + F I+SG + W+R+ +SHT L G F+ A + + +
Sbjct: 61 DDSFPPEDFGIVSGMLNVKWDRIAPASNVSHTVVLRPLKAGYFNFTSATVTYLAQEDGPV 120
Query: 471 QEAFSTPILPLDVLADRPPEKKF-----EWA 394
F++ +LA R +++F +WA
Sbjct: 121 VIGFTSAPGQGGILAQREFDRRFSPHFLDWA 151
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 778,372,759
Number of Sequences: 1393205
Number of extensions: 16714900
Number of successful extensions: 50989
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 47710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50898
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 49918505760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
