Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002780A_C01 KMC002780A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190487.1| G-protein beta family; protein id: At3g49180.1,... 55 6e-07
gb|AAM64848.1| unknown [Arabidopsis thaliana] 55 6e-07
ref|NP_116687.1| Chromosome segregation and condensation; Smc2p ... 32 3.1
ref|XP_227475.1| similar to pogo transposable element with ZNF d... 32 4.1
gb|EAA40898.1| GLP_79_60646_49118 [Giardia lamblia ATCC 50803] 32 5.3
>ref|NP_190487.1| G-protein beta family; protein id: At3g49180.1, supported by cDNA:
33776. [Arabidopsis thaliana] gi|11357747|pir||T45823
hypothetical protein F2K15.40 - Arabidopsis thaliana
gi|6723388|emb|CAB66397.1| putative protein [Arabidopsis
thaliana] gi|28416679|gb|AAO42870.1| At3g49180
[Arabidopsis thaliana]
Length = 438
Score = 54.7 bits (130), Expect = 6e-07
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -2
Query: 502 MISKYAKELQHQGSAAASEMEVEKLKHDCQRSMQMANHWKKMYEDLQQFCVKELLDGG 329
+I + KELQ QGSAA +EME+E+LK + +RS+QM W+K YE+L Q ++E GG
Sbjct: 380 LIDEQVKELQQQGSAA-TEMEMERLKLEYKRSLQMNEQWQKNYENLLQVVMEEEQIGG 436
>gb|AAM64848.1| unknown [Arabidopsis thaliana]
Length = 438
Score = 54.7 bits (130), Expect = 6e-07
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = -2
Query: 502 MISKYAKELQHQGSAAASEMEVEKLKHDCQRSMQMANHWKKMYEDLQQFCVKELLDGG 329
+I + KELQ QGSAA +EME+E+LK + +RS+QM W+K YE+L Q ++E GG
Sbjct: 380 LIDEQVKELQQQGSAA-TEMEMERLKLEYKRSLQMNEQWQKNYENLLQVVMEEEQIGG 436
>ref|NP_116687.1| Chromosome segregation and condensation; Smc2p [Saccharomyces
cerevisiae] gi|730753|sp|P38989|SMC2_YEAST Chromosome
segregation protein SMC2 (DA-box protein SMC2)
gi|1362470|pir||A56157 chromosome segregation protein
SMC2 - yeast (Saccharomyces cerevisiae)
gi|468040|gb|AAA17416.1| Smc2p [Saccharomyces cerevisiae]
gi|836786|dbj|BAA09270.1| chromosome segregation protein
SMC2p [Saccharomyces cerevisiae]
Length = 1170
Score = 32.3 bits (72), Expect = 3.1
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = -2
Query: 469 QGSAAASEMEVEKLKHDCQRSMQMANHWKKMYEDLQQ 359
Q +SE+E++KL HD + N+ +K+ EDL+Q
Sbjct: 902 QDEKKSSELELQKLVHDLNKYKSNTNNMEKIIEDLRQ 938
>ref|XP_227475.1| similar to pogo transposable element with ZNF domain isoform 1
[Homo sapiens] [Rattus norvegicus]
Length = 1057
Score = 32.0 bits (71), Expect = 4.1
Identities = 14/30 (46%), Positives = 21/30 (69%)
Frame = +1
Query: 319 FLLDHHLTAPSHKTVANLHTFSSNDLPFAL 408
F+L HHLT + + VA HTF++ DLP ++
Sbjct: 738 FMLRHHLTPHARRAVA--HTFTTQDLPLSM 765
>gb|EAA40898.1| GLP_79_60646_49118 [Giardia lamblia ATCC 50803]
Length = 3842
Score = 31.6 bits (70), Expect = 5.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = -2
Query: 496 SKYAKELQHQGSAAASEMEVEKLKHDCQRSMQMAN------HWKKMYEDLQQF 356
+K+A+ L G AAA + V +K Q + N HW+K++E L+ F
Sbjct: 1236 TKFARLLPEDGVAAALKRAVTSMKQKSQLIADLGNINLKPRHWEKIFETLKPF 1288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,913,098
Number of Sequences: 1393205
Number of extensions: 8172004
Number of successful extensions: 17001
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16993
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
