Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002776A_C01 KMC002776A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01207|POL2_BAYMJ Genome polyprotein 2 [Contains: Helper comp... 32 4.8
ref|NP_404067.1| putative multi-drug efflux protein [Yersinia pe... 32 8.3
gb|AAB93841.1| polyprotein [Inkoo virus] 32 8.3
>sp|Q01207|POL2_BAYMJ Genome polyprotein 2 [Contains: Helper component proteinase
(HC-Pro); 70 kDa protein] gi|221112|dbj|BAA00876.1|
polyprotein [Barley yellow mosaic virus]
Length = 890
Score = 32.3 bits (72), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 60 SHVHCIYTLFLKLEFLITFIKQRSIGRITKMLPQM 164
+H +C +LF+ L F ITF RS R + LP +
Sbjct: 139 AHGYCYLSLFIPLSFRITFENARSFSRFLEQLPDI 173
>ref|NP_404067.1| putative multi-drug efflux protein [Yersinia pestis]
gi|22127630|ref|NP_671053.1| putative multidrug
resistance protein [Yersinia pestis KIM]
gi|25509683|pir||AD0052 probable multi-drug efflux
protein YPO0421 [imported] - Yersinia pestis (strain
CO92) gi|15978517|emb|CAC89279.1| putative multi-drug
efflux protein [Yersinia pestis CO92]
gi|21960742|gb|AAM87304.1|AE013979_4 putative multidrug
resistance protein [Yersinia pestis KIM]
Length = 1028
Score = 31.6 bits (70), Expect = 8.3
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Frame = -1
Query: 510 VKDIGQLHYSLEVSRLDFPHCHIRRIEVVG--LVS-----KTIYLSSNEC*PEGTGANPM 352
V D GQL E RL P + ++ +G LVS K++YL +G G +P
Sbjct: 214 VSDAGQLQVGSESIRLH-PTGEFQSVQELGNLLVSQPGSPKSVYLRDIATVTQGFGHSPT 272
Query: 351 NCYEALGEEAIAV 313
N Y A G+ A+A+
Sbjct: 273 NIYRANGQPALAL 285
>gb|AAB93841.1| polyprotein [Inkoo virus]
Length = 1443
Score = 31.6 bits (70), Expect = 8.3
Identities = 21/54 (38%), Positives = 29/54 (52%), Gaps = 1/54 (1%)
Frame = -1
Query: 444 IRRIEVVGLVSKTIYLSSNEC*PEGTGANPMNCYEALG-EEAIAVFLRASCPIV 286
I+ ++G V Y S+ E EGT A +NC+E + E I + ASCPIV
Sbjct: 1245 IKMKAILGDVKYKNYQSNIEINAEGTCAGCINCFENIHCEFTIHTTVEASCPIV 1298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,435,317
Number of Sequences: 1393205
Number of extensions: 11576034
Number of successful extensions: 23430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23400
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
