Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002774A_C01 KMC002774A_c01
(589 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9B149|NU2C_LOTJA NAD(P)H-quinone oxidoreductase chain 2, chl... 92 6e-18
sp|Q9XQ96|NU2C_BRANA NAD(P)H-quinone oxidoreductase chain 2, chl... 92 6e-18
ref|NP_084840.1| NADH dehydrogenase subunit 2 [Lotus japonicus] ... 92 6e-18
gb|AAG26108.1| NADH dehydrogenase subunit B [Cercidiphyllum japo... 92 6e-18
ref|NP_084739.1| NADH dehydrogenase subunit 2 [Oenothera elata s... 91 1e-17
>sp|Q9B149|NU2C_LOTJA NAD(P)H-quinone oxidoreductase chain 2, chloroplast (NAD(P)H
dehydrogenase, chain 2) (NADH-plastoquinone
oxidoreductase chain 2)
Length = 510
Score = 91.7 bits (226), Expect = 6e-18
Identities = 49/54 (90%), Positives = 50/54 (91%)
Frame = -2
Query: 336 LKIRAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGGSNGGCGSMI 175
L+I AILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG SNGG SMI
Sbjct: 299 LEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMI 352
>sp|Q9XQ96|NU2C_BRANA NAD(P)H-quinone oxidoreductase chain 2, chloroplast (NAD(P)H
dehydrogenase, chain 2) (NADH-plastoquinone
oxidoreductase chain 2)
gi|4731325|gb|AAD28444.1|AF126026_1 NADH dehydrogenase
subunit 2 [Brassica napus]
Length = 510
Score = 91.7 bits (226), Expect = 6e-18
Identities = 49/54 (90%), Positives = 50/54 (91%)
Frame = -2
Query: 336 LKIRAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGGSNGGCGSMI 175
L+I AILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG SNGG SMI
Sbjct: 299 LEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMI 352
>ref|NP_084840.1| NADH dehydrogenase subunit 2 [Lotus japonicus]
gi|13518497|ref|NP_084855.1| NADH dehydrogenase subunit
2 [Lotus japonicus] gi|13359022|dbj|BAB33239.1| NADH
dehydrogenase ND2 [Lotus japonicus]
gi|13359038|dbj|BAB33255.1| NADH dehydrogenase ND2
[Lotus japonicus]
Length = 387
Score = 91.7 bits (226), Expect = 6e-18
Identities = 49/54 (90%), Positives = 50/54 (91%)
Frame = -2
Query: 336 LKIRAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGGSNGGCGSMI 175
L+I AILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG SNGG SMI
Sbjct: 176 LEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMI 229
>gb|AAG26108.1| NADH dehydrogenase subunit B [Cercidiphyllum japonicum]
Length = 484
Score = 91.7 bits (226), Expect = 6e-18
Identities = 49/54 (90%), Positives = 50/54 (91%)
Frame = -2
Query: 336 LKIRAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGGSNGGCGSMI 175
L+I AILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG SNGG SMI
Sbjct: 299 LEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMI 352
>ref|NP_084739.1| NADH dehydrogenase subunit 2 [Oenothera elata subsp. hookeri]
gi|13518411|ref|NP_084770.1| NADH dehydrogenase subunit
2 [Oenothera elata subsp. hookeri]
gi|18203278|sp|Q9ME36|NU2C_OENHO NAD(P)H-quinone
oxidoreductase chain 2, chloroplast (NAD(P)H
dehydrogenase, chain 2) (NADH-plastoquinone
oxidoreductase chain 2) gi|6723796|emb|CAB67207.1|
NADH-plastoquinone oxidoreductase subunit 2 [Oenothera
elata subsp. hookeri] gi|6723827|emb|CAB67238.1|
NADH-plastoquinone oxidoreductase subunit 2 [Oenothera
elata subsp. hookeri]
Length = 510
Score = 90.5 bits (223), Expect = 1e-17
Identities = 48/54 (88%), Positives = 50/54 (91%)
Frame = -2
Query: 336 LKIRAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGGSNGGCGSMI 175
L+I AILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVG +NGG SMI
Sbjct: 299 LEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDANGGYASMI 352
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,208,636
Number of Sequences: 1393205
Number of extensions: 11720793
Number of successful extensions: 61153
Number of sequences better than 10.0: 5805
Number of HSP's better than 10.0 without gapping: 44065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55577
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
