Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002766A_C02 KMC002766A_c02
(983 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85917.1| auxin response factor 7b [Oryza sativa] 96 1e-18
dbj|BAB85916.1| auxin response factor 7a [Oryza sativa] 95 2e-18
gb|AAB92475.1| IAA25 [Arabidopsis thaliana] 91 2e-17
gb|AAB84358.1| IAA21 [Arabidopsis thaliana] 91 2e-17
gb|AAL85006.1| unknown protein [Arabidopsis thaliana] 91 2e-17
>dbj|BAB85917.1| auxin response factor 7b [Oryza sativa]
Length = 1096
Score = 95.5 bits (236), Expect = 1e-18
Identities = 44/60 (73%), Positives = 47/60 (78%)
Frame = -3
Query: 981 YVDHEGDVLLVGDDPWEEFVNCVRCIKILSPPEVQPMSLDGDFGSGGLPNPACSSSDGGN 802
Y DHE DVLLVGDDPWE+FV CVRCI+ILSP E M L GDFG LPN ACSSSDGG+
Sbjct: 1030 YEDHEKDVLLVGDDPWEDFVKCVRCIRILSPQEEMQMRLVGDFGDSFLPNQACSSSDGGH 1089
>dbj|BAB85916.1| auxin response factor 7a [Oryza sativa]
Length = 1123
Score = 94.7 bits (234), Expect = 2e-18
Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 1/61 (1%)
Frame = -3
Query: 981 YVDHEGDVLLVGDDPWEEFVNCVRCIKILSPPEVQPMSLDG-DFGSGGLPNPACSSSDGG 805
Y DHE D+LL+GDDPWEEFV CV+CI+ILSP EVQ MSL+G D G+ PN ACSSSDGG
Sbjct: 1041 YKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMSLEGCDLGNNIPPNQACSSSDGG 1100
Query: 804 N 802
N
Sbjct: 1101 N 1101
>gb|AAB92475.1| IAA25 [Arabidopsis thaliana]
Length = 476
Score = 91.3 bits (225), Expect = 2e-17
Identities = 42/60 (70%), Positives = 46/60 (76%)
Frame = -3
Query: 981 YVDHEGDVLLVGDDPWEEFVNCVRCIKILSPPEVQPMSLDGDFGSGGLPNPACSSSDGGN 802
YVDHE D+LLVGDDPWEEFVNCV+ IKILS EVQ MSLDG+F + N ACS D GN
Sbjct: 401 YVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGN 460
>gb|AAB84358.1| IAA21 [Arabidopsis thaliana]
Length = 381
Score = 91.3 bits (225), Expect = 2e-17
Identities = 42/60 (70%), Positives = 46/60 (76%)
Frame = -3
Query: 981 YVDHEGDVLLVGDDPWEEFVNCVRCIKILSPPEVQPMSLDGDFGSGGLPNPACSSSDGGN 802
YVDHE D+LLVGDDPWEEFVNCV+ IKILS EVQ MSLDG+F + N ACS D GN
Sbjct: 306 YVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGN 365
>gb|AAL85006.1| unknown protein [Arabidopsis thaliana]
Length = 1045
Score = 91.3 bits (225), Expect = 2e-17
Identities = 42/60 (70%), Positives = 46/60 (76%)
Frame = -3
Query: 981 YVDHEGDVLLVGDDPWEEFVNCVRCIKILSPPEVQPMSLDGDFGSGGLPNPACSSSDGGN 802
YVDHE D+LLVGDDPWEEFVNCV+ IKILS EVQ MSLDG+F + N ACS D GN
Sbjct: 970 YVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGN 1029
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 839,055,703
Number of Sequences: 1393205
Number of extensions: 18774159
Number of successful extensions: 40916
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 39305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40873
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 56574306528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
