Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002764A_C01 KMC002764A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191877.1| hypothetical protein; protein id: At3g63180.1 [... 46 4e-04
ref|NP_248531.1| conserved hypothetical protein [Methanococcus j... 33 3.9
gb|AAG23740.1|AF230379_1 N,N'-diacetylchitobiose phosphorylase [... 32 8.6
>ref|NP_191877.1| hypothetical protein; protein id: At3g63180.1 [Arabidopsis thaliana]
gi|11357488|pir||T48107 hypothetical protein F16M2.30 -
Arabidopsis thaliana gi|7523400|emb|CAB86419.1|
hypothetical protein [Arabidopsis thaliana]
Length = 975
Score = 45.8 bits (107), Expect = 4e-04
Identities = 19/32 (59%), Positives = 25/32 (77%)
Frame = -1
Query: 616 SAGTGPTSSPVCGRNVPSILSSCPSQLSELKY 521
++G+ +SPVCGR VP I++SCP LSELKY
Sbjct: 944 ASGSTQKNSPVCGRTVPPIITSCPGHLSELKY 975
>ref|NP_248531.1| conserved hypothetical protein [Methanococcus jannaschii]
gi|18202581|sp|Q58918|CRCB_METJA Protein crcB homolog
gi|2128060|pir||B64490 hypothetical protein homolog
MJ1523 - Methanococcus jannaschii
gi|1592153|gb|AAB99542.1| conserved hypothetical protein
[Methanococcus jannaschii]
Length = 124
Score = 32.7 bits (73), Expect = 3.9
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = -1
Query: 232 YMGLQFCNQIQVGTTFFVEGYLLVDGVLLFDALKAILI 119
++G FC + +TF E ++LVD LLF AL ILI
Sbjct: 66 FIGTGFCGALTTFSTFSYETFVLVDEGLLFKALLNILI 103
>gb|AAG23740.1|AF230379_1 N,N'-diacetylchitobiose phosphorylase [Vibrio furnissii]
Length = 800
Score = 31.6 bits (70), Expect = 8.6
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +1
Query: 202 GFDYKTVGPCIPTSFSSIIITHQ*KWQQYLSSHQN 306
GFD TV PCIP ++S +T + + Y S QN
Sbjct: 729 GFDTLTVDPCIPAAWSGFEVTREWRGATYHISVQN 763
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,268,469
Number of Sequences: 1393205
Number of extensions: 10571737
Number of successful extensions: 17377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17375
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
