Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002762A_C01 KMC002762A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_660770.1| exodeoxyribonuclease V 125 kD polypeptide [Buch... 34 1.6
ref|NP_113274.1| Tic22 [Guillardia theta] gi|25396714|pir||G9008... 32 6.0
sp|Q62523|ZYX_MOUSE Zyxin gi|1430883|emb|CAA67510.1| zyxin [Mus ... 32 7.9
ref|NP_035907.1| zyxin [Mus musculus] gi|1524172|emb|CAA68984.1|... 32 7.9
dbj|BAC29173.1| unnamed protein product [Mus musculus] 32 7.9
>ref|NP_660770.1| exodeoxyribonuclease V 125 kD polypeptide [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gi|25008436|sp|Q8K9B0|EX5C_BUCAP Exodeoxyribonuclease V
gamma chain gi|21623345|gb|AAM67981.1|
exodeoxyribonuclease V 125 kD polypeptide [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 1061
Score = 33.9 bits (76), Expect = 1.6
Identities = 21/49 (42%), Positives = 30/49 (60%), Gaps = 5/49 (10%)
Frame = +1
Query: 220 LLCYFNTQ-EFFPSK----QFQLNSY*IIYSTSIFKSQNKEKGVPLFFN 351
LL +FN + PS F LN+Y IIY SIFKS+NK++ +P + +
Sbjct: 340 LLSFFNEDSKLKPSDIVITSFSLNTY-IIYINSIFKSKNKKEKIPFYIS 387
>ref|NP_113274.1| Tic22 [Guillardia theta] gi|25396714|pir||G90087 Tic22 [imported] -
Guillardia theta nucleomorph
gi|13794459|gb|AAK39834.1|AF165818_42 Tic22 [Guillardia
theta]
Length = 307
Score = 32.0 bits (71), Expect = 6.0
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 244 EFFPSKQFQLNSY*IIYSTSIFKSQNKEKGVPLFFNLNIKTTGNKSPSTPL 396
+F+P ++ N+ II + +IF +K +G+PLF+N ++K TPL
Sbjct: 179 KFYPDQKQIKNANGIINNINIF---SKFRGIPLFYNESVKINRGNDEITPL 226
>sp|Q62523|ZYX_MOUSE Zyxin gi|1430883|emb|CAA67510.1| zyxin [Mus musculus]
Length = 564
Score = 31.6 bits (70), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 364 TTGNKSPSTPLISTVFPAPKHGITAPLFTPMKSK 465
++ N P PL PAPK AP FTP+ SK
Sbjct: 237 SSANTQPRGPLSQAPTPAPKFAPVAPKFTPVVSK 270
>ref|NP_035907.1| zyxin [Mus musculus] gi|1524172|emb|CAA68984.1| zyxin [Mus
musculus]
Length = 564
Score = 31.6 bits (70), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 364 TTGNKSPSTPLISTVFPAPKHGITAPLFTPMKSK 465
++ N P PL PAPK AP FTP+ SK
Sbjct: 237 SSANTQPRGPLSQAPTPAPKFAPVAPKFTPVVSK 270
>dbj|BAC29173.1| unnamed protein product [Mus musculus]
Length = 564
Score = 31.6 bits (70), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 364 TTGNKSPSTPLISTVFPAPKHGITAPLFTPMKSK 465
++ N P PL PAPK AP FTP+ SK
Sbjct: 237 SSANTQPRGPLSQAPTPAPKFAPVAPKFTPVVSK 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,108,419
Number of Sequences: 1393205
Number of extensions: 10594176
Number of successful extensions: 25270
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25262
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
