Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002759A_C01 KMC002759A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fra... 41 0.010
pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean gi|9... 39 0.037
pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa gi|495... 37 0.11
gb|AAK62311.1|AF359515_1 acetyl-CoA carboxylase [Lolium rigidum] 37 0.11
gb|AAK62310.1|AF359514_1 acetyl-CoA carboxylase [Lolium rigidum] 37 0.11
>pir||T07081 acetyl-CoA carboxylase (EC 6.4.1.2) B - soybean (fragment)
gi|1066857|gb|AAA81578.1| acetyl-CoA carboxylase
Length = 1978
Score = 40.8 bits (94), Expect = 0.010
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = -3
Query: 513 ERHAHIIVRSLPEEYMFDEDLFSDNI 436
E HAHIIV+SL EEY+ E+LFSDNI
Sbjct: 900 ESHAHIIVQSLVEEYLSVEELFSDNI 925
>pir||T07084 acetyl-CoA carboxylase (EC 6.4.1.2) A - soybean
gi|992917|gb|AAA75528.1| acetyl CoA carboxylase
Length = 2261
Score = 38.9 bits (89), Expect = 0.037
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -3
Query: 513 ERHAHIIVRSLPEEYMFDEDLFSDNI 436
E HAHIIV+SL +EY+ E+LFSDNI
Sbjct: 900 ESHAHIIVQSLFDEYLSVEELFSDNI 925
>pir||T09538 acetyl-CoA carboxylase (EC 6.4.1.2) - alfalfa
gi|495725|gb|AAB42144.1| acetyl-CoA carboxylase
[Medicago sativa]
Length = 2257
Score = 37.4 bits (85), Expect = 0.11
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -3
Query: 513 ERHAHIIVRSLPEEYMFDEDLFSDNI 436
E HAH IV+SL EEY+ E+LFSDNI
Sbjct: 900 ESHAHKIVQSLFEEYLSVEELFSDNI 925
>gb|AAK62311.1|AF359515_1 acetyl-CoA carboxylase [Lolium rigidum]
Length = 1071
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 513 ERHAHIIVRSLPEEYMFDEDLFSDNI 436
E HAH IV+SL EEY+ E+LFSD I
Sbjct: 185 ESHAHFIVKSLFEEYLLVEELFSDGI 210
>gb|AAK62310.1|AF359514_1 acetyl-CoA carboxylase [Lolium rigidum]
Length = 1071
Score = 37.4 bits (85), Expect = 0.11
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 513 ERHAHIIVRSLPEEYMFDEDLFSDNI 436
E HAH IV+SL EEY+ E+LFSD I
Sbjct: 185 ESHAHFIVKSLFEEYLLVEELFSDGI 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,140,373
Number of Sequences: 1393205
Number of extensions: 10154394
Number of successful extensions: 23841
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 23250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23834
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
