Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002755A_C01 KMC002755A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188319.1| calmodulin-binding protein; protein id: At3g169... 155 3e-46
dbj|BAA94977.1| transcription factor-like protein [Arabidopsis t... 137 8e-41
gb|AAM91103.1| AT4g16150/dl4115w [Arabidopsis thaliana] 162 2e-39
ref|NP_193350.2| calmodulin-binding protein; protein id: At4g161... 146 2e-34
ref|NP_201227.2| calmodulin-binding protein; protein id: At5g642... 119 2e-26
>ref|NP_188319.1| calmodulin-binding protein; protein id: At3g16940.1 [Arabidopsis
thaliana]
Length = 852
Score = 155 bits (392), Expect(2) = 3e-46
Identities = 69/78 (88%), Positives = 74/78 (94%)
Frame = +3
Query: 318 NVKPVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYA 497
NVKPVNLP SG I+LFDRKMLRNFRKDG+NWKKKKDG+TVKEAHEHLKVGNEERIHVYYA
Sbjct: 55 NVKPVNLPNSGRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYA 114
Query: 498 HGQDHPNFVRRCYWLLDK 551
HG+D+ FVRRCYWLLDK
Sbjct: 115 HGEDNTTFVRRCYWLLDK 132
Score = 51.6 bits (122), Expect(2) = 3e-46
Identities = 21/29 (72%), Positives = 27/29 (92%)
Frame = +1
Query: 193 VHGFHT*QELDVGSIMEEARSRWLRPNEI 279
+HGFHT Q+LDV +++EEA+SRWLRPNEI
Sbjct: 14 IHGFHTLQDLDVQTMLEEAKSRWLRPNEI 42
>dbj|BAA94977.1| transcription factor-like protein [Arabidopsis thaliana]
Length = 838
Score = 137 bits (345), Expect(2) = 8e-41
Identities = 60/68 (88%), Positives = 65/68 (95%)
Frame = +3
Query: 348 GTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDHPNFVR 527
G I+LFDRKMLRNFRKDG+NWKKKKDG+TVKEAHEHLKVGNEERIHVYYAHG+D+ FVR
Sbjct: 48 GRIILFDRKMLRNFRKDGHNWKKKKDGRTVKEAHEHLKVGNEERIHVYYAHGEDNTTFVR 107
Query: 528 RCYWLLDK 551
RCYWLLDK
Sbjct: 108 RCYWLLDK 115
Score = 51.6 bits (122), Expect(2) = 8e-41
Identities = 21/29 (72%), Positives = 27/29 (92%)
Frame = +1
Query: 193 VHGFHT*QELDVGSIMEEARSRWLRPNEI 279
+HGFHT Q+LDV +++EEA+SRWLRPNEI
Sbjct: 14 IHGFHTLQDLDVQTMLEEAKSRWLRPNEI 42
>gb|AAM91103.1| AT4g16150/dl4115w [Arabidopsis thaliana]
Length = 923
Score = 162 bits (411), Expect = 2e-39
Identities = 73/78 (93%), Positives = 76/78 (96%)
Frame = +3
Query: 318 NVKPVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYA 497
NVKPVNLPKSGTIVLFDRKMLRNFRKDG+NWKKKKDGKT+KEAHEHLKVGNEERIHVYYA
Sbjct: 55 NVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYA 114
Query: 498 HGQDHPNFVRRCYWLLDK 551
HG+D P FVRRCYWLLDK
Sbjct: 115 HGEDTPTFVRRCYWLLDK 132
Score = 49.7 bits (117), Expect = 3e-05
Identities = 30/84 (35%), Positives = 44/84 (51%)
Frame = +1
Query: 193 VHGFHT*QELDVGSIMEEARSRWLRPNEIQCQAL*LQVFHHVMSSQ*IYPKVVLLYYLTA 372
+HGFHT Q+LD+ ++++EA SRWLR NEI L F + PK +
Sbjct: 14 IHGFHTLQDLDIQTMLDEAYSRWLRXNEIHA-LLCNHKFFTINVKPVNLPKSGTIVLFDR 72
Query: 373 RCLGTFEKMVTTGKRKRMGKLLKK 444
+ L F K K+K+ GK +K+
Sbjct: 73 KMLRNFRKDGHNWKKKKDGKTIKE 96
>ref|NP_193350.2| calmodulin-binding protein; protein id: At4g16150.1 [Arabidopsis
thaliana]
Length = 906
Score = 146 bits (369), Expect = 2e-34
Identities = 67/81 (82%), Positives = 72/81 (88%), Gaps = 2/81 (2%)
Frame = +3
Query: 315 CNVK--PVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHV 488
CN K +N+ GTIVLFDRKMLRNFRKDG+NWKKKKDGKT+KEAHEHLKVGNEERIHV
Sbjct: 47 CNHKFFTINVKPCGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHV 106
Query: 489 YYAHGQDHPNFVRRCYWLLDK 551
YYAHG+D P FVRRCYWLLDK
Sbjct: 107 YYAHGEDTPTFVRRCYWLLDK 127
Score = 50.8 bits (120), Expect = 1e-05
Identities = 29/84 (34%), Positives = 48/84 (56%)
Frame = +1
Query: 193 VHGFHT*QELDVGSIMEEARSRWLRPNEIQCQAL*LQVFHHVMSSQ*IYPKVVLLYYLTA 372
+HGFHT Q+LD+ ++++EA SRWLRPNEI + +H + + P ++ +
Sbjct: 14 IHGFHTLQDLDIQTMLDEAYSRWLRPNEIHA-----LLCNHKFFTINVKPCGTIVLF-DR 67
Query: 373 RCLGTFEKMVTTGKRKRMGKLLKK 444
+ L F K K+K+ GK +K+
Sbjct: 68 KMLRNFRKDGHNWKKKKDGKTIKE 91
>ref|NP_201227.2| calmodulin-binding protein; protein id: At5g64220.1 [Arabidopsis
thaliana]
Length = 1076
Score = 119 bits (299), Expect = 2e-26
Identities = 51/76 (67%), Positives = 65/76 (85%)
Frame = +3
Query: 324 KPVNLPKSGTIVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHG 503
+P N P SG++ LFDRK+LR FRKDG+NW+KKKDGKTVKEAHE LKVG+ + +H YYAHG
Sbjct: 53 EPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHG 112
Query: 504 QDHPNFVRRCYWLLDK 551
+D+ NF RRCYW+L++
Sbjct: 113 EDNENFQRRCYWMLEQ 128
Score = 38.9 bits (89), Expect = 0.047
Identities = 27/93 (29%), Positives = 45/93 (48%)
Frame = +1
Query: 220 LDVGSIMEEARSRWLRPNEIQCQAL*LQVFHHVMSSQ*IYPKVVLLYYLTARCLGTFEKM 399
+D+ ++ EA+ RWLRP EI C+ L H+ S P L+ + L F K
Sbjct: 19 VDIKQLLSEAQHRWLRPAEI-CEILRNHQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKD 77
Query: 400 VTTGKRKRMGKLLKKPMSI*KLVMKKGSMYIMH 498
++K+ GK +K+ +K GS+ ++H
Sbjct: 78 GHNWRKKKDGKTVKEAHE----KLKVGSIDVLH 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,967,825
Number of Sequences: 1393205
Number of extensions: 12739706
Number of successful extensions: 31984
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 30950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31971
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
