Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002753A_C02 KMC002753A_c02
(761 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197096.1| putative protein; protein id: At5g15920.1 [Arab... 182 6e-60
emb|CAD59412.1| SMC5 protein [Oryza sativa] 174 7e-59
dbj|BAC56936.1| structural maintenance of chromosomes protein 5 ... 119 3e-31
emb|CAD59184.1| SMC5 protein [Mus musculus] 119 5e-31
ref|NP_722503.1| SMC5 structural maintenance of chromosomes 5-li... 119 5e-31
>ref|NP_197096.1| putative protein; protein id: At5g15920.1 [Arabidopsis thaliana]
gi|11357578|pir||T51375 hypothetical protein F1N13_60 -
Arabidopsis thaliana gi|9755638|emb|CAC01791.1| putative
protein [Arabidopsis thaliana]
Length = 1053
Score = 182 bits (461), Expect(2) = 6e-60
Identities = 88/99 (88%), Positives = 94/99 (94%)
Frame = -1
Query: 761 EVSLDEHDTNFDQSGIHIKVKFRENGQLQIHSAHHQSGGERSVSTIVYLVSLQDLTNCPF 582
EVSLDE DT+FDQ GIHIKVKFRE+GQLQ+ S+HHQSGGERSVSTI+YLVSLQDLTNCPF
Sbjct: 905 EVSLDERDTDFDQYGIHIKVKFRESGQLQVLSSHHQSGGERSVSTILYLVSLQDLTNCPF 964
Query: 581 RVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLAYP 465
RVVDEINQGMDPINERKMFQQLVRAAS+PNTPQCFL P
Sbjct: 965 RVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1003
Score = 71.6 bits (174), Expect(2) = 6e-60
Identities = 31/40 (77%), Positives = 37/40 (92%)
Frame = -2
Query: 478 FLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGRS 359
FLLTPKLLP+L+YSEACSILN+MNGP+I +PSKVW+ G S
Sbjct: 999 FLLTPKLLPELEYSEACSILNIMNGPYIAEPSKVWSLGDS 1038
>emb|CAD59412.1| SMC5 protein [Oryza sativa]
Length = 1056
Score = 174 bits (440), Expect(2) = 7e-59
Identities = 85/99 (85%), Positives = 91/99 (91%)
Frame = -1
Query: 761 EVSLDEHDTNFDQSGIHIKVKFRENGQLQIHSAHHQSGGERSVSTIVYLVSLQDLTNCPF 582
EVSLDEH +F+Q GI IKVKFR+ GQLQ+ SAHHQSGGERSVSTI+YLVSLQDLTNCPF
Sbjct: 913 EVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPF 972
Query: 581 RVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLAYP 465
RVVDEINQGMDPINERKMFQQLVRAAS+PNTPQCFL P
Sbjct: 973 RVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1011
Score = 76.3 bits (186), Expect(2) = 7e-59
Identities = 31/38 (81%), Positives = 37/38 (96%)
Frame = -2
Query: 478 FLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTG 365
FLLTPKLLPDL+YS+ACSILN+MNGPWIE+P+K W+TG
Sbjct: 1007 FLLTPKLLPDLEYSDACSILNIMNGPWIEKPAKAWSTG 1044
>dbj|BAC56936.1| structural maintenance of chromosomes protein 5 [Xenopus laevis]
Length = 1065
Score = 119 bits (297), Expect(2) = 3e-31
Identities = 55/94 (58%), Positives = 72/94 (76%)
Frame = -1
Query: 746 EHDTNFDQSGIHIKVKFRENGQLQIHSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDE 567
E + +D+ GI I+VKFR + QL + HHQSGGERSVST++YL++LQ+L CPFRVVDE
Sbjct: 926 EKEEEYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE 985
Query: 566 INQGMDPINERKMFQQLVRAASKPNTPQCFLAYP 465
INQGMDP+NER++F+ +V+ A K NT Q F P
Sbjct: 986 INQGMDPVNERRVFEMVVKTACKENTSQYFFITP 1019
Score = 38.5 bits (88), Expect(2) = 3e-31
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -2
Query: 478 FLLTPKLLPDLQYSEACSILNVMNGPWIEQPSK 380
F +TPKLL +L Y+E ++L V NGP++ +P+K
Sbjct: 1015 FFITPKLLQNLTYAEKMTVLFVYNGPFMLEPTK 1047
>emb|CAD59184.1| SMC5 protein [Mus musculus]
Length = 1101
Score = 119 bits (299), Expect(2) = 5e-31
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = -1
Query: 746 EHDTNFDQSGIHIKVKFRENGQLQIHSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDE 567
E++ ++D+ GI I+VKFR + QL + HHQSGGERSVST++YL++LQ+L CPFRVVDE
Sbjct: 961 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE 1020
Query: 566 INQGMDPINERKMFQQLVRAASKPNTPQCFLAYP 465
INQGMDPINER++F+ +V A K NT Q F P
Sbjct: 1021 INQGMDPINERRVFEMVVNTACKENTSQYFFITP 1054
Score = 37.4 bits (85), Expect(2) = 5e-31
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -2
Query: 478 FLLTPKLLPDLQYSEACSILNVMNGPWIEQPSK 380
F +TPKLL +L YSE ++L V NGP + +P++
Sbjct: 1050 FFITPKLLQNLPYSEKMTVLFVYNGPHMLEPNR 1082
>ref|NP_722503.1| SMC5 structural maintenance of chromosomes 5-like 1; SMC5 protein
[Mus musculus] gi|23468222|gb|AAH38345.1| similar to
hypothetical protein FLJ22116 [Mus musculus]
Length = 1087
Score = 119 bits (299), Expect(2) = 5e-31
Identities = 56/94 (59%), Positives = 73/94 (77%)
Frame = -1
Query: 746 EHDTNFDQSGIHIKVKFRENGQLQIHSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDE 567
E++ ++D+ GI I+VKFR + QL + HHQSGGERSVST++YL++LQ+L CPFRVVDE
Sbjct: 947 ENEEDYDKYGIRIRVKFRSSTQLHELTPHHQSGGERSVSTMLYLMALQELNRCPFRVVDE 1006
Query: 566 INQGMDPINERKMFQQLVRAASKPNTPQCFLAYP 465
INQGMDPINER++F+ +V A K NT Q F P
Sbjct: 1007 INQGMDPINERRVFEMVVNTACKENTSQYFFITP 1040
Score = 37.4 bits (85), Expect(2) = 5e-31
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = -2
Query: 478 FLLTPKLLPDLQYSEACSILNVMNGPWIEQPSK 380
F +TPKLL +L YSE ++L V NGP + +P++
Sbjct: 1036 FFITPKLLQNLPYSEKMTVLFVYNGPHMLEPNR 1068
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,450,292
Number of Sequences: 1393205
Number of extensions: 13950426
Number of successful extensions: 35122
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 33719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35112
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 36974710344
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
