Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002751A_C01 KMC002751A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01726.1| dbj|BAA83571.1~gene_id:MXL8.20~similar to unknow... 59 4e-08
ref|NP_188769.1| hypothetical protein; protein id: At3g21320.1 [... 59 4e-08
dbj|BAA83571.1| Similar to Arabidopsis thaliana chromosome II BA... 58 1e-07
ref|NP_180164.1| unknown protein; protein id: At2g25930.1 [Arabi... 54 2e-06
dbj|BAB64680.1| P0697C12.15 [Oryza sativa (japonica cultivar-gro... 52 6e-06
>dbj|BAB01726.1| dbj|BAA83571.1~gene_id:MXL8.20~similar to unknown protein
[Arabidopsis thaliana]
Length = 623
Score = 59.3 bits (142), Expect = 4e-08
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = -2
Query: 471 QMYKEFELQGSRTSSPSEMGQVAEGRDALPLFPTVPVEPEGAPQSLETGQQ--IRVIKVV 298
Q + ++ GS SSP E ++ + LPLFPT EP + QQ +R IK V
Sbjct: 541 QESNDSDIHGSTASSPPEKHKL----EVLPLFPT---EPTHQTDEYKQKQQPMLRAIKAV 593
Query: 297 PHNRRSATASAARIFQSIQEERKQYD 220
PHN SA+ SAARIF+ IQEER+ D
Sbjct: 594 PHNSTSASESAARIFRFIQEERRDSD 619
>ref|NP_188769.1| hypothetical protein; protein id: At3g21320.1 [Arabidopsis
thaliana]
Length = 540
Score = 59.3 bits (142), Expect = 4e-08
Identities = 38/86 (44%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = -2
Query: 471 QMYKEFELQGSRTSSPSEMGQVAEGRDALPLFPTVPVEPEGAPQSLETGQQ--IRVIKVV 298
Q + ++ GS SSP E ++ + LPLFPT EP + QQ +R IK V
Sbjct: 458 QESNDSDIHGSTASSPPEKHKL----EVLPLFPT---EPTHQTDEYKQKQQPMLRAIKAV 510
Query: 297 PHNRRSATASAARIFQSIQEERKQYD 220
PHN SA+ SAARIF+ IQEER+ D
Sbjct: 511 PHNSTSASESAARIFRFIQEERRDSD 536
>dbj|BAA83571.1| Similar to Arabidopsis thaliana chromosome II BAC T19L18; unknown
protein (AC004747) [Oryza sativa (japonica
cultivar-group)]
Length = 760
Score = 57.8 bits (138), Expect = 1e-07
Identities = 36/82 (43%), Positives = 48/82 (57%), Gaps = 1/82 (1%)
Frame = -2
Query: 462 KEFELQGSRTSSPSEMGQVAEGRDALPLFPTVPVEP-EGAPQSLETGQQIRVIKVVPHNR 286
++ E Q S SSP + Q + G + FPTV + + P Q VIKVVPHN
Sbjct: 680 RDSEAQASSASSPFDRFQCS-GSGPVSAFPTVSAQNNQPQPSYSSRDNQTNVIKVVPHNS 738
Query: 285 RSATASAARIFQSIQEERKQYD 220
R+A+ SAARIF+SIQ ER++ D
Sbjct: 739 RTASESAARIFRSIQMERQRDD 760
>ref|NP_180164.1| unknown protein; protein id: At2g25930.1 [Arabidopsis thaliana]
gi|28201800|sp|O82804|ELF3_ARATH EARLY FLOWERING 3
protein (Nematode responsive protein)
gi|7487200|pir||T02630 hypothetical protein At2g25930
[imported] - Arabidopsis thaliana
gi|3413719|gb|AAC31242.1| unknown protein [Arabidopsis
thaliana] gi|20197364|gb|AAM15042.1| unknown protein
[Arabidopsis thaliana]
Length = 695
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = -2
Query: 327 GQQIRVIKVVPHNRRSATASAARIFQSIQEERKQYD 220
G RVIKVVPHN + A+ +AARIFQSIQEERK+YD
Sbjct: 656 GGVTRVIKVVPHNAKLASENAARIFQSIQEERKRYD 691
>dbj|BAB64680.1| P0697C12.15 [Oryza sativa (japonica cultivar-group)]
Length = 765
Score = 52.0 bits (123), Expect = 6e-06
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = -2
Query: 537 HNQSSCDVPVQGNGATSHVMYQQMYKEFELQGSRTSSPSEMGQVAEGRDALPLFPTVPVE 358
H++ SC++ S + ++ E Q S SSP + Q G + FPT +
Sbjct: 663 HSRMSCNM-----SHPSGIWRFHASRDSEAQASSASSPFDRLQCG-GSGPVSAFPTASAQ 716
Query: 357 -PEGAPQSLETGQQIRVIKVVPHNR-RSATASAARIFQSIQEERKQYD 220
+ P S Q VI+V+PHN ++A+ SAARIF+SIQ ER+Q D
Sbjct: 717 NTQPQPSSGSRDNQTNVIRVIPHNNSQTASESAARIFRSIQMERQQDD 764
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,565,041
Number of Sequences: 1393205
Number of extensions: 12498308
Number of successful extensions: 32955
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 31128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32939
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
