Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002750A_C01 KMC002750A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197954.1| putative protein; protein id: At5g25820.1 [Arab... 137 3e-34
ref|NP_195005.1| putative protein; protein id: At4g32790.1 [Arab... 135 2e-33
dbj|BAC42936.1| unknown protein [Arabidopsis thaliana] 135 2e-33
ref|NP_197468.1| putative protein; protein id: At5g19670.1 [Arab... 129 2e-32
dbj|BAB08970.1| contains similarity to limonene cyclase~gene_id:... 133 1e-31
>ref|NP_197954.1| putative protein; protein id: At5g25820.1 [Arabidopsis thaliana]
Length = 654
Score = 137 bits (346), Expect(2) = 3e-34
Identities = 62/81 (76%), Positives = 70/81 (85%)
Frame = -2
Query: 561 EAISYECVPVIISDNFVPPFFEVLNWESFAVIVLEKDIPNLKNILLSIPEKRYLRLLMRV 382
EAI Y+CVPVIISDNFVPPFFEVLNWESFA+ + EKDIPNLK IL+SIPE RY + MRV
Sbjct: 559 EAIFYDCVPVIISDNFVPPFFEVLNWESFAIFIPEKDIPNLKKILMSIPESRYRSMQMRV 618
Query: 381 KKVKQHFLWHKNPVKYDIFHM 319
KKV++HFLWH P KYD+FHM
Sbjct: 619 KKVQKHFLWHAKPEKYDMFHM 639
Score = 29.3 bits (64), Expect(2) = 3e-34
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3
Query: 317 LLHSIWYNRVFSAS 276
+LHSIWYNRVF S
Sbjct: 640 ILHSIWYNRVFQIS 653
>ref|NP_195005.1| putative protein; protein id: At4g32790.1 [Arabidopsis thaliana]
gi|7486402|pir||T04446 hypothetical protein F4D11.10 -
Arabidopsis thaliana gi|3063691|emb|CAA18582.1| putative
protein [Arabidopsis thaliana]
gi|7270226|emb|CAB79996.1| putative protein [Arabidopsis
thaliana]
Length = 593
Score = 135 bits (341), Expect(2) = 2e-33
Identities = 62/81 (76%), Positives = 71/81 (87%)
Frame = -2
Query: 561 EAISYECVPVIISDNFVPPFFEVLNWESFAVIVLEKDIPNLKNILLSIPEKRYLRLLMRV 382
EA+ YECVPVIISDNFVPPFFEVLNWESFAV VLEKDIP+LKNIL+SI E+RY + MRV
Sbjct: 500 EALFYECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPDLKNILVSITEERYREMQMRV 559
Query: 381 KKVKQHFLWHKNPVKYDIFHM 319
K V++HFLWH P ++DIFHM
Sbjct: 560 KMVQKHFLWHSKPERFDIFHM 580
Score = 28.1 bits (61), Expect(2) = 2e-33
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -3
Query: 317 LLHSIWYNRVF 285
+LHSIWYNRVF
Sbjct: 581 ILHSIWYNRVF 591
>dbj|BAC42936.1| unknown protein [Arabidopsis thaliana]
Length = 270
Score = 135 bits (341), Expect(2) = 2e-33
Identities = 62/81 (76%), Positives = 71/81 (87%)
Frame = -2
Query: 561 EAISYECVPVIISDNFVPPFFEVLNWESFAVIVLEKDIPNLKNILLSIPEKRYLRLLMRV 382
EA+ YECVPVIISDNFVPPFFEVLNWESFAV VLEKDIP+LKNIL+SI E+RY + MRV
Sbjct: 177 EALFYECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPDLKNILVSITEERYREMQMRV 236
Query: 381 KKVKQHFLWHKNPVKYDIFHM 319
K V++HFLWH P ++DIFHM
Sbjct: 237 KMVQKHFLWHSKPERFDIFHM 257
Score = 28.1 bits (61), Expect(2) = 2e-33
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -3
Query: 317 LLHSIWYNRVF 285
+LHSIWYNRVF
Sbjct: 258 ILHSIWYNRVF 268
>ref|NP_197468.1| putative protein; protein id: At5g19670.1 [Arabidopsis thaliana]
Length = 600
Score = 129 bits (325), Expect(2) = 2e-32
Identities = 57/81 (70%), Positives = 70/81 (86%)
Frame = -2
Query: 561 EAISYECVPVIISDNFVPPFFEVLNWESFAVIVLEKDIPNLKNILLSIPEKRYLRLLMRV 382
E+I YECVPVIISDNFVPPFFEVL+W +F+VIV EKDIP LK+ILLSIPE +Y+++ M V
Sbjct: 504 ESIFYECVPVIISDNFVPPFFEVLDWSAFSVIVAEKDIPRLKDILLSIPEDKYVKMQMAV 563
Query: 381 KKVKQHFLWHKNPVKYDIFHM 319
+K ++HFLWH P KYD+FHM
Sbjct: 564 RKAQRHFLWHAKPEKYDLFHM 584
Score = 30.8 bits (68), Expect(2) = 2e-32
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -3
Query: 317 LLHSIWYNRVFSASAR 270
+LHSIWYNRVF A R
Sbjct: 585 VLHSIWYNRVFQAKRR 600
>dbj|BAB08970.1| contains similarity to limonene cyclase~gene_id:K15O15.2
[Arabidopsis thaliana]
Length = 559
Score = 133 bits (335), Expect(2) = 1e-31
Identities = 62/81 (76%), Positives = 69/81 (84%)
Frame = -2
Query: 561 EAISYECVPVIISDNFVPPFFEVLNWESFAVIVLEKDIPNLKNILLSIPEKRYLRLLMRV 382
EAI ECVPVII+DN+VPPFFEVLNWE FAV V EKDIPNL+NILLSIPE RY+ + RV
Sbjct: 463 EAIINECVPVIIADNYVPPFFEVLNWEEFAVFVEEKDIPNLRNILLSIPEDRYIGMQARV 522
Query: 381 KKVKQHFLWHKNPVKYDIFHM 319
K V+QHFLWHK PVK+D FHM
Sbjct: 523 KAVQQHFLWHKKPVKFDQFHM 543
Score = 24.6 bits (52), Expect(2) = 1e-31
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 317 LLHSIWYNRVFSASAR 270
+LHSIWY+RV R
Sbjct: 544 ILHSIWYSRVHRIKTR 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,148,867
Number of Sequences: 1393205
Number of extensions: 10279573
Number of successful extensions: 30329
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 29568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30323
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
