Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002748A_C01 KMC002748A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16991.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.59
gb|AAO51372.1| similar to Dictyostelium discoideum (Slime mold).... 35 0.77
gb|EAA20457.1| ccr4-not transcription complex, subunit 7 [Plasmo... 34 1.3
ref|NP_008286.1|ND4L_10704 NADH dehydrogenase subunit 4L [Drosop... 33 2.2
ref|XP_116868.1| hypothetical protein XP_116868 [Homo sapiens] 33 2.2
>gb|EAA16991.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1023
Score = 35.0 bits (79), Expect = 0.59
Identities = 27/111 (24%), Positives = 48/111 (42%), Gaps = 7/111 (6%)
Frame = +1
Query: 121 NYIYSLRLQTMASN*SMWSNILTNNH*N-------RIANYNRTPNS*QTYEYQKYTSNIP 279
N++ + L+++ N ++ NN N +IANYN NS +++
Sbjct: 51 NFLDNEILKSLNDNFDNPTSFSNNNEENNLNQIEEKIANYNNNSNSNSNSNSNSNSNSNS 110
Query: 280 PTKENKSNKEQIANYYNKEQRQLQQRNKMSISTIDSTCDSLALSLLPSHCT 432
+ NKS++ I NY +K+ R + I+ C+ L L + H T
Sbjct: 111 NSNNNKSSESNILNYNDKQYR----------NNIEKECNPLTLPIETLHTT 151
>gb|AAO51372.1| similar to Dictyostelium discoideum (Slime mold).
Homeobox-containing protein (Fragment)
Length = 766
Score = 34.7 bits (78), Expect = 0.77
Identities = 17/63 (26%), Positives = 31/63 (48%)
Frame = +1
Query: 175 SNILTNNH*NRIANYNRTPNS*QTYEYQKYTSNIPPTKENKSNKEQIANYYNKEQRQLQQ 354
SN NN+ N NYN N+ Y Y +N ++ + ++Q+ ++Q+Q QQ
Sbjct: 301 SNNNNNNNYNNNNNYNYNNNNNNNYNNNNYNNNNYQQQQQQQQEQQLLQQQQQQQQQQQQ 360
Query: 355 RNK 363
+ +
Sbjct: 361 QQQ 363
>gb|EAA20457.1| ccr4-not transcription complex, subunit 7 [Plasmodium yoelii
yoelii]
Length = 675
Score = 33.9 bits (76), Expect = 1.3
Identities = 28/104 (26%), Positives = 46/104 (43%), Gaps = 6/104 (5%)
Frame = +1
Query: 121 NYIYSLRLQTMASN*SMWSNILTNNH*NRIANYNRTPNS*QTYEYQKYTSNIPPTKENKS 300
NY + M +N + +NI NN+ N N N T ++ + KY ++ NK+
Sbjct: 400 NYNMIPGMNNMGANNNFNTNICNNNN-NNNGNINNTNSNMNNFSINKYNTSQIINSINKN 458
Query: 301 ------NKEQIANYYNKEQRQLQQRNKMSISTIDSTCDSLALSL 414
N I N NK + + N I+T D + +S A+S+
Sbjct: 459 GRMGLVNNTYINNNNNKIGDNINENNHNRINTNDVSSNSNAVSI 502
>ref|NP_008286.1|ND4L_10704 NADH dehydrogenase subunit 4L [Drosophila melanogaster]
gi|128885|sp|P18934|NULM_DROME NADH-ubiquinone
oxidoreductase chain 4L gi|85199|pir||S01188 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4L - fruit
fly (Drosophila melanogaster) mitochondrion
gi|552529|gb|AAA69712.1| NADH dehydrogenase 4L
[Drosophila melanogaster] gi|1166539|gb|AAC47820.1| NADH
dehydrogenase subunit 4L [Drosophila melanogaster]
gi|7799411|emb|CAB91060.1| NADH dehydrogenase subunit 4L
[Drosophila melanogaster] gi|8573383|gb|AAF77235.1| NADH
dehydrogenase subunit 4L [Drosophila melanogaster]
gi|8573396|gb|AAF77247.1| NADH dehydrogenase subunit 4L
[Drosophila melanogaster]
Length = 96
Score = 33.1 bits (74), Expect = 2.2
Identities = 25/68 (36%), Positives = 39/68 (56%)
Frame = -1
Query: 366 HFISLL*LSLFFVVVIGYLFFVAFVFLSWGNVRSILLVLVSLLGVRCSVVVGYSILVIVS 187
H +S+L LSL F+V++ LFF+ F++L+ N S ++ V C +G SILV +
Sbjct: 27 HLLSML-LSLEFIVLM--LFFMLFIYLNMLNYESYFSMMFLTFSV-CEGALGLSILVSM- 81
Query: 186 *YIRPHAS 163
IR H +
Sbjct: 82 --IRTHGN 87
>ref|XP_116868.1| hypothetical protein XP_116868 [Homo sapiens]
Length = 146
Score = 33.1 bits (74), Expect = 2.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 405 PFFITFTLYLYFIILLPLALFTVYF 479
P FITF++Y+YF+ L L +F V F
Sbjct: 63 PTFITFSIYMYFLFLFCLGVFNVLF 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,531,192
Number of Sequences: 1393205
Number of extensions: 7374860
Number of successful extensions: 21322
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 19886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21212
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
