Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002747A_C01 KMC002747A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177852.1| hypothetical protein; protein id: At1g77280.1 [... 33 2.9
gb|AAA62273.1| ORF2 33 2.9
pir||I50494 serine proteinase inhibitor CP9 - common carp gi|439... 32 3.8
ref|NP_778088.1| single-strand binding protein [Buchnera aphidic... 32 5.0
gb|AAA86393.1| NADH dehydrogenase subunit 5 32 6.5
>ref|NP_177852.1| hypothetical protein; protein id: At1g77280.1 [Arabidopsis
thaliana] gi|7488271|pir||T00456 protein kinase homolog
T14N5.13 - Arabidopsis thaliana
gi|3540207|gb|AAC34357.1| Putative protein kinase
[Arabidopsis thaliana]
Length = 781
Score = 32.7 bits (73), Expect = 2.9
Identities = 23/71 (32%), Positives = 35/71 (48%), Gaps = 6/71 (8%)
Frame = +2
Query: 314 SAQFTLLHEQQHMCSKKLLIKNLNVHKSDHGPRENAR------STLAKPRWEERNNVGKL 475
SA+ L+ E + + K+L+ + KS H R +A L+K W N GK+
Sbjct: 131 SARKILVREAKSFSATKVLV---GISKSHHAIRSSASVAKYIAKKLSKDCWVIAVNNGKI 187
Query: 476 IFQKQIHPSQT 508
+FQK+ PS T
Sbjct: 188 LFQKEGSPSST 198
>gb|AAA62273.1| ORF2
Length = 141
Score = 32.7 bits (73), Expect = 2.9
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 7/63 (11%)
Frame = -1
Query: 184 VVVRSI*LSSLILCIIHDQLLWT*DCIFNYILTIFFCI------YLLLYGLCAFMF-CPF 26
V++ I +LC ++ C F + +FFCI Y L+Y LC F+F F
Sbjct: 70 VIILFIFFFYFVLCFLY--------CCFYLVCLVFFCIFCCVLCYFLIYFLCCFLFWVVF 121
Query: 25 LFI 17
LF+
Sbjct: 122 LFL 124
>pir||I50494 serine proteinase inhibitor CP9 - common carp
gi|439153|gb|AAA73954.1| serine protease inhibitor
Length = 410
Score = 32.3 bits (72), Expect = 3.8
Identities = 19/69 (27%), Positives = 38/69 (54%)
Frame = -1
Query: 388 HIQIFYEELFRAHMLLFMKKSELSTSSELKKLVLDLDEAIAS*RA*GVSDLASFAFRLQE 209
H++ ++++LFR+ + LFM K +S +S+L ++ ++ A SD A F+ +E
Sbjct: 288 HLKNWHDKLFRSSVDLFMPKFSISATSKLNDILTEMGVTDA------FSDTADFSGMTEE 341
Query: 208 FSILMLLVV 182
+ + VV
Sbjct: 342 LKVKVSQVV 350
>ref|NP_778088.1| single-strand binding protein [Buchnera aphidicola (Baizongia
pistaciae)] gi|27904360|gb|AAO27193.1| single-strand
binding protein [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 166
Score = 32.0 bits (71), Expect = 5.0
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Frame = +3
Query: 111 SQVHRSWSCIIHKIKDDNHIERTTTTSNISI---------LNSCNLKANEARSETP*ALQ 263
SQV+ S K KD N IER T +S+ NS +L A+ S+ L
Sbjct: 76 SQVYIEGSLQTRKWKDQNGIERYITEIIVSVGGTMQMLGSRNSSSLTASSGLSKNNDNLS 135
Query: 264 EAIASSKSRTSFFSSEEVLNSLFFMNSSI 350
+ + S K + SF S+ N+L F + I
Sbjct: 136 KQLLSEKKQESFNDSKLQNNNLDFDDEDI 164
>gb|AAA86393.1| NADH dehydrogenase subunit 5
Length = 98
Score = 31.6 bits (70), Expect = 6.5
Identities = 13/35 (37%), Positives = 21/35 (59%), Gaps = 2/35 (5%)
Frame = -1
Query: 109 CIFNYILTIF--FCIYLLLYGLCAFMFCPFLFIKI 11
C+F + T+F FC+ + +YG C + FC L + I
Sbjct: 35 CVFIALATLFSCFCLSVCMYGYCFYDFCLVLMLDI 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,583,804
Number of Sequences: 1393205
Number of extensions: 8367643
Number of successful extensions: 20651
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20637
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
