Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002746A_C01 KMC002746A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC38984.1| hypothetical protein [Ascaris suum] 33 1.7
gb|AAA97428.1| ATPase 6 33 2.2
ref|XP_284487.1| hypothetical protein XP_284487 [Mus musculus] g... 33 2.9
ref|NP_792607.1| proline/betaine transporter [Pseudomonas syring... 32 3.8
gb|EAA18640.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.5
>emb|CAC38984.1| hypothetical protein [Ascaris suum]
Length = 371
Score = 33.5 bits (75), Expect = 1.7
Identities = 29/94 (30%), Positives = 42/94 (43%), Gaps = 5/94 (5%)
Frame = -2
Query: 295 CWFGSFACCLRVYYVS--QLCSGYEGNPLRAVGVKWGSVIVLCFNLLLFYSVS---VCFC 131
C+ F C R++Y S +LC R V +WG V + LF + C+
Sbjct: 128 CFCSLFNWCRRLFYRSWCRLC--------RCVSTRWGHGFVTVRVIPLFAVAAGFHCCWS 179
Query: 130 FCSILNYHRLLSFCYVSDSGPCYLP*EGYSHGYL 29
FCS+LN+ R L Y S C +SHG++
Sbjct: 180 FCSLLNWCRRL--FYRSWCRLCRCVSTRWSHGFV 211
>gb|AAA97428.1| ATPase 6
Length = 231
Score = 33.1 bits (74), Expect = 2.2
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = -3
Query: 189 VLLCYALICFCFTLFLFVFAFVLFSITIGF*ASVMYQILGLATFHERVILMVILNFNIY 13
V Y + C+ F LF+FVF F L + + IL L F +IL +I++F ++
Sbjct: 170 VFFFYGVFCYWFILFIFVFCFCLLFYVFLYLLDLFAAILQLFIFC-NMILQLIMDFLLF 227
>ref|XP_284487.1| hypothetical protein XP_284487 [Mus musculus]
gi|26329453|dbj|BAC28465.1| unnamed protein product [Mus
musculus]
Length = 168
Score = 32.7 bits (73), Expect = 2.9
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 192 AVLLCYALICFCFTLFLFVFAFVLF 118
A L C+ C CF LFLFV +LF
Sbjct: 33 ASLCCFCCCCCCFVLFLFVLLIILF 57
>ref|NP_792607.1| proline/betaine transporter [Pseudomonas syringae pv. tomato str.
DC3000] gi|28853233|gb|AAO56302.1| proline/betaine
transporter [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 438
Score = 32.3 bits (72), Expect = 3.8
Identities = 24/111 (21%), Positives = 48/111 (42%), Gaps = 9/111 (8%)
Frame = -3
Query: 408 YPNLGMCCWSLVSLWKKSAFKVVLFCGLRCMH-FRVPSYAGLARLLAASEFIMSVSSVAG 232
YP + +SLV LW + V+ + +PS+ G + + ++ V+ + G
Sbjct: 241 YPRQTLISFSLVVLWTVCTYAVLFYIPSYAQRVLGLPSWMGFSAGMMGGAVLIIVTPIVG 300
Query: 231 TKETP*GR--WELNGAVLLCYALICFCFTLFLFV------FAFVLFSITIG 103
G W L AV + ++ + +FLF+ F+ ++F + +G
Sbjct: 301 ALADRSGHRPWLLGSAVAIFFS----AYPMFLFINQMPGLFSLLIFELVLG 347
>gb|EAA18640.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1461
Score = 31.6 bits (70), Expect = 6.5
Identities = 25/103 (24%), Positives = 45/103 (43%)
Frame = +2
Query: 131 AKTNRNRVKQKQIKA*HNNTAPFNSHRPQGVSFVPATELTDIINSEAASKRAKPA*EGTR 310
++ N N++KQ + K +NN F SH+ ++ V T I ++ SK K +
Sbjct: 890 SEKNENQIKQSKYKIENNNDPTFFSHKNNVINNVSITHCKSKIKNDLPSKTQK---KNNY 946
Query: 311 KCIHLSPQNSTTLKADFFHKLTKLQQHIPRLG*PSYTPHKNTS 439
I +P ++ ++ + + K + H L P NTS
Sbjct: 947 NHIDYNPNKTSFIEKNINYWNKKKKTHTKNL------PKINTS 983
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,483,472
Number of Sequences: 1393205
Number of extensions: 10352708
Number of successful extensions: 27776
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27671
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
