Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002742A_C01 KMC002742A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC12987.1| ubiquitin activating enzyme E1 [Cicer arietinum] 210 1e-53
ref|NP_565693.1| ubiquitin activating enzyme 1 (UBA1); protein i... 202 2e-51
gb|AAL90910.1| At2g30110/T27E13.15 [Arabidopsis thaliana] 202 2e-51
pir||T03964 probable ubiquitin-protein ligase (EC 6.3.2.19) - co... 201 7e-51
sp|P31251|UBA2_WHEAT Ubiquitin-activating enzyme E1 2 gi|170684|... 199 4e-50
>emb|CAC12987.1| ubiquitin activating enzyme E1 [Cicer arietinum]
Length = 173
Score = 210 bits (535), Expect = 1e-53
Identities = 92/112 (82%), Positives = 107/112 (95%)
Frame = -3
Query: 660 EPVPPKVIKHKDMSWTVWDRWILEGNPTLKELLEWLKAKGLHAYSISCGNCMLYNSMFPR 481
EPVP K+IKH+D+SWTVWDRWI+ NPTL+ELL+WLKAKGL+AYSISCG+C+LYNSMFPR
Sbjct: 62 EPVPAKIIKHQDLSWTVWDRWIIRNNPTLRELLDWLKAKGLNAYSISCGSCLLYNSMFPR 121
Query: 480 HKERIDKKVADLAREVAKLEIPPYRRHLDVVVACEDDEDNDIDIPQVSIYFR 325
HKER+DKKV DLA++VAK+EIP YRRH+DVVVACEDD+DNDIDIPQVSIYFR
Sbjct: 122 HKERMDKKVVDLAKDVAKMEIPSYRRHIDVVVACEDDDDNDIDIPQVSIYFR 173
>ref|NP_565693.1| ubiquitin activating enzyme 1 (UBA1); protein id: At2g30110.1,
supported by cDNA: gi_19699086 [Arabidopsis thaliana]
gi|7437978|pir||T00587 probable ubiquitin-protein ligase
(EC 6.3.2.19) - Arabidopsis thaliana
gi|1750376|gb|AAB39246.1| ubiquitin activating enzyme
[Arabidopsis thaliana] gi|3150409|gb|AAC16961.1|
ubiquitin activating enzyme 1 (UBA1) [Arabidopsis
thaliana]
Length = 1080
Score = 202 bits (515), Expect = 2e-51
Identities = 86/112 (76%), Positives = 106/112 (93%)
Frame = -3
Query: 660 EPVPPKVIKHKDMSWTVWDRWILEGNPTLKELLEWLKAKGLHAYSISCGNCMLYNSMFPR 481
EP+PPKV+KH+DM+WTVWDRW+L+GNPTL+E+L+WL+ KGL AYSISCG+C+L+NSMF R
Sbjct: 969 EPLPPKVVKHRDMAWTVWDRWVLKGNPTLREVLQWLEDKGLSAYSISCGSCLLFNSMFTR 1028
Query: 480 HKERIDKKVADLAREVAKLEIPPYRRHLDVVVACEDDEDNDIDIPQVSIYFR 325
HKER+DKKV DLAR+VAK+E+PPYR HLDVVVACED++DND+DIP VSIYFR
Sbjct: 1029 HKERMDKKVVDLARDVAKVELPPYRNHLDVVVACEDEDDNDVDIPLVSIYFR 1080
>gb|AAL90910.1| At2g30110/T27E13.15 [Arabidopsis thaliana]
Length = 1080
Score = 202 bits (515), Expect = 2e-51
Identities = 86/112 (76%), Positives = 106/112 (93%)
Frame = -3
Query: 660 EPVPPKVIKHKDMSWTVWDRWILEGNPTLKELLEWLKAKGLHAYSISCGNCMLYNSMFPR 481
EP+PPKV+KH+DM+WTVWDRW+L+GNPTL+E+L+WL+ KGL AYSISCG+C+L+NSMF R
Sbjct: 969 EPLPPKVVKHRDMAWTVWDRWVLKGNPTLREVLQWLEDKGLSAYSISCGSCLLFNSMFTR 1028
Query: 480 HKERIDKKVADLAREVAKLEIPPYRRHLDVVVACEDDEDNDIDIPQVSIYFR 325
HKER+DKKV DLAR+VAK+E+PPYR HLDVVVACED++DND+DIP VSIYFR
Sbjct: 1029 HKERMDKKVVDLARDVAKVELPPYRNHLDVVVACEDEDDNDVDIPLVSIYFR 1080
>pir||T03964 probable ubiquitin-protein ligase (EC 6.3.2.19) - common tobacco
gi|1808656|emb|CAA71762.1| Ubiquitin activating enzyme E1
[Nicotiana tabacum]
Length = 1080
Score = 201 bits (511), Expect = 7e-51
Identities = 86/112 (76%), Positives = 106/112 (93%)
Frame = -3
Query: 660 EPVPPKVIKHKDMSWTVWDRWILEGNPTLKELLEWLKAKGLHAYSISCGNCMLYNSMFPR 481
EPVPPKV+KH+DM+WTVWDRWIL+ NPTL+ELL+WL+ KGL+AYSIS G+C+LYNSMFP+
Sbjct: 969 EPVPPKVVKHQDMNWTVWDRWILKDNPTLRELLQWLQNKGLNAYSISYGSCLLYNSMFPK 1028
Query: 480 HKERIDKKVADLAREVAKLEIPPYRRHLDVVVACEDDEDNDIDIPQVSIYFR 325
HKER+D+K+ DLAREVAK ++PPYR+H DVVVACED+EDND+DIPQ+SIYFR
Sbjct: 1029 HKERMDRKLVDLAREVAKADLPPYRKHFDVVVACEDEEDNDVDIPQMSIYFR 1080
>sp|P31251|UBA2_WHEAT Ubiquitin-activating enzyme E1 2 gi|170684|gb|AAA34265.1| ubiquitin
activating enyme
Length = 1051
Score = 199 bits (505), Expect = 4e-50
Identities = 87/112 (77%), Positives = 102/112 (90%)
Frame = -3
Query: 660 EPVPPKVIKHKDMSWTVWDRWILEGNPTLKELLEWLKAKGLHAYSISCGNCMLYNSMFPR 481
EPVPPK IKH+++SWTVWDRW + GN TL+ELLEWLK KGL+AYSISCG +LYNSMFPR
Sbjct: 940 EPVPPKTIKHQELSWTVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPR 999
Query: 480 HKERIDKKVADLAREVAKLEIPPYRRHLDVVVACEDDEDNDIDIPQVSIYFR 325
HKER+D+KV D+AREVAK+E+P YRRHLDVVVACEDD+DND+DIP VS+YFR
Sbjct: 1000 HKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,584,032
Number of Sequences: 1393205
Number of extensions: 12712689
Number of successful extensions: 37129
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 35139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37026
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
