Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002741A_C01 KMC002741A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180998.1| unknown protein; protein id: At2g34510.1, suppo... 167 8e-58
ref|NP_564344.1| expressed protein; protein id: At1g29980.1, sup... 163 4e-57
dbj|BAB90140.1| OJ1414_E05.5 [Oryza sativa (japonica cultivar-gr... 146 2e-49
gb|AAK74007.1| At1g29980/T1P2_9 [Arabidopsis thaliana] gi|163233... 130 8e-49
dbj|BAB21293.1| P0410E03.24 [Oryza sativa (japonica cultivar-gro... 118 4e-35
>ref|NP_180998.1| unknown protein; protein id: At2g34510.1, supported by cDNA:
gi_13272420 [Arabidopsis thaliana]
gi|25349284|pir||E84757 hypothetical protein At2g34510
[imported] - Arabidopsis thaliana
gi|3128209|gb|AAC26689.1| unknown protein [Arabidopsis
thaliana] gi|13272421|gb|AAK17149.1|AF325081_1 unknown
protein [Arabidopsis thaliana]
Length = 401
Score = 167 bits (423), Expect(2) = 8e-58
Identities = 84/106 (79%), Positives = 94/106 (88%), Gaps = 5/106 (4%)
Frame = +1
Query: 238 GKRQGGMILIVPQGRHAIRLGNDAEISQEITVEKGSIYSITFCAARTCAQLESINVSV-- 411
G++QGGMILIVP+GRHA+RLGNDAEISQE+TVEKGSIYS+TF AARTCAQLES+NVSV
Sbjct: 81 GQKQGGMILIVPEGRHAVRLGNDAEISQELTVEKGSIYSVTFSAARTCAQLESLNVSVAS 140
Query: 412 ---PPASQTIDLQTLYNVQGWNPYAVAFNADEDNVRLVFKNPGMED 540
P ASQTIDLQT+Y+VQGW+PYA AF A D VRLVFKNPGMED
Sbjct: 141 SDEPIASQTIDLQTVYSVQGWDPYAWAFEAVVDRVRLVFKNPGMED 186
Score = 78.2 bits (191), Expect(2) = 8e-58
Identities = 42/72 (58%), Positives = 52/72 (71%), Gaps = 7/72 (9%)
Frame = +3
Query: 51 SMFVPLILLHLVLAA-------PEEDGLVPNGDFEASPSNGFPSEATIIEGPSEVPSWKS 209
S+ + L+ L +V AA P EDGLV NGDFE PSNGFP +A IIE SE+PSW+S
Sbjct: 13 SILILLLGLSIVAAADSAGKTSPVEDGLVVNGDFETPPSNGFPDDA-IIEDTSEIPSWRS 71
Query: 210 NGTVELVESGQK 245
+GTVEL++SGQK
Sbjct: 72 DGTVELIKSGQK 83
>ref|NP_564344.1| expressed protein; protein id: At1g29980.1, supported by cDNA:
gi_15010695 [Arabidopsis thaliana]
gi|25349281|pir||F86423 unknown protein, 27870-25287
[imported] - Arabidopsis thaliana
gi|12324170|gb|AAG52057.1|AC022455_11 unknown protein;
27870-25287 [Arabidopsis thaliana]
Length = 407
Score = 163 bits (412), Expect(2) = 4e-57
Identities = 80/112 (71%), Positives = 95/112 (84%), Gaps = 9/112 (8%)
Frame = +1
Query: 232 SQGKRQGGMILIVPQGRHAIRLGNDAEISQEITVEKGSIYSITFCAARTCAQLESINVSV 411
+ G++QGGMILIVPQGRHA+RLGNDAEISQ++TVEKG +YS+TF AARTCAQLESINVSV
Sbjct: 79 NSGQKQGGMILIVPQGRHAVRLGNDAEISQDLTVEKGFVYSVTFSAARTCAQLESINVSV 138
Query: 412 PP---------ASQTIDLQTLYNVQGWNPYAVAFNADEDNVRLVFKNPGMED 540
AS+ +DLQTLY+VQGW+PYA AF A++D+VRLVFKNPGMED
Sbjct: 139 ASVNADADDMLASRNVDLQTLYSVQGWDPYAWAFEAEDDHVRLVFKNPGMED 190
Score = 80.1 bits (196), Expect(2) = 4e-57
Identities = 41/84 (48%), Positives = 58/84 (68%), Gaps = 7/84 (8%)
Frame = +3
Query: 15 MARSSTRMKWV-VSMFVPLILLHLVLAAPE------EDGLVPNGDFEASPSNGFPSEATI 173
M S+ R KW + +F+ + + +++A + EDGLV NGDFE SPS+GFP + +
Sbjct: 1 MVPSNNRCKWSSIFLFLLSVSVAVLVAVADDKSPAVEDGLVINGDFETSPSSGFPDDG-V 59
Query: 174 IEGPSEVPSWKSNGTVELVESGQK 245
+GPS++PSWKSNGTVEL+ SGQK
Sbjct: 60 TDGPSDIPSWKSNGTVELINSGQK 83
>dbj|BAB90140.1| OJ1414_E05.5 [Oryza sativa (japonica cultivar-group)]
Length = 399
Score = 146 bits (368), Expect(2) = 2e-49
Identities = 72/104 (69%), Positives = 85/104 (81%), Gaps = 1/104 (0%)
Frame = +1
Query: 232 SQGKRQGGMILIVPQGRHAIRLGNDAEISQEITVEKGSIYSITFCAARTCAQLESINVSV 411
S G+ QGGMILIVPQG HA+RLGNDA I Q + VEKGS Y+ITF AARTCAQLES+NVSV
Sbjct: 76 SAGQHQGGMILIVPQGDHAVRLGNDASIGQVVQVEKGSEYAITFSAARTCAQLESLNVSV 135
Query: 412 -PPASQTIDLQTLYNVQGWNPYAVAFNADEDNVRLVFKNPGMED 540
ASQT+DLQTLYN++GW+ YA+AF A ++ L F+NPGMED
Sbjct: 136 LGGASQTVDLQTLYNIEGWDAYALAFQATDEQASLEFRNPGMED 179
Score = 71.6 bits (174), Expect(2) = 2e-49
Identities = 36/79 (45%), Positives = 49/79 (61%), Gaps = 3/79 (3%)
Frame = +3
Query: 15 MARSSTRMKWVVSMFVPLILL---HLVLAAPEEDGLVPNGDFEASPSNGFPSEATIIEGP 185
M S R ++ + + L+LL HL AA EDGL+ NGDFE +P+ GF A++ EG
Sbjct: 1 MEGDSARRLALLGLCLGLLLLAPSHLASAAAVEDGLLSNGDFETAPAGGFVKSASVAEGA 60
Query: 186 SEVPSWKSNGTVELVESGQ 242
S +P W NGTVEL+ +GQ
Sbjct: 61 SSIPGWTINGTVELISAGQ 79
>gb|AAK74007.1| At1g29980/T1P2_9 [Arabidopsis thaliana] gi|16323310|gb|AAL15410.1|
At1g29980/T1P2_9 [Arabidopsis thaliana]
Length = 216
Score = 130 bits (327), Expect(3) = 8e-49
Identities = 64/91 (70%), Positives = 76/91 (83%), Gaps = 9/91 (9%)
Frame = +1
Query: 232 SQGKRQGGMILIVPQGRHAIRLGNDAEISQEITVEKGSIYSITFCAARTCAQLESINVSV 411
+ G++QGGMILIVPQGRHA+RLGNDAEISQ++TVEKG +YS+TF AARTCAQLESINVSV
Sbjct: 79 NSGQKQGGMILIVPQGRHAVRLGNDAEISQDLTVEKGFVYSVTFSAARTCAQLESINVSV 138
Query: 412 PP---------ASQTIDLQTLYNVQGWNPYA 477
AS+ +DLQTLY+VQGW+PYA
Sbjct: 139 ASVNADADDMLASRNVDLQTLYSVQGWDPYA 169
Score = 80.1 bits (196), Expect(3) = 8e-49
Identities = 41/84 (48%), Positives = 58/84 (68%), Gaps = 7/84 (8%)
Frame = +3
Query: 15 MARSSTRMKWV-VSMFVPLILLHLVLAAPE------EDGLVPNGDFEASPSNGFPSEATI 173
M S+ R KW + +F+ + + +++A + EDGLV NGDFE SPS+GFP + +
Sbjct: 1 MVPSNNRCKWSSIFLFLLSVSVAVLVAVADDKSPAVEDGLVINGDFETSPSSGFPDDG-V 59
Query: 174 IEGPSEVPSWKSNGTVELVESGQK 245
+GPS++PSWKSNGTVEL+ SGQK
Sbjct: 60 TDGPSDIPSWKSNGTVELINSGQK 83
Score = 25.8 bits (55), Expect(3) = 8e-49
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 503 MLGWFLRTLVWRM 541
M GWFLR VW+M
Sbjct: 178 MYGWFLRIRVWKM 190
>dbj|BAB21293.1| P0410E03.24 [Oryza sativa (japonica cultivar-group)]
gi|21104673|dbj|BAB93263.1| P0046B10.1 [Oryza sativa
(japonica cultivar-group)]
Length = 373
Score = 118 bits (295), Expect(2) = 4e-35
Identities = 54/101 (53%), Positives = 71/101 (69%)
Frame = +1
Query: 238 GKRQGGMILIVPQGRHAIRLGNDAEISQEITVEKGSIYSITFCAARTCAQLESINVSVPP 417
G +QG M+L+VPQG HA+RLGN+A I Q + V +G+ Y++TF AARTCAQ E +NVSV P
Sbjct: 69 GHKQGDMLLVVPQGAHAVRLGNEASIRQRLAVTRGAYYAVTFSAARTCAQAEQLNVSVSP 128
Query: 418 ASQTIDLQTLYNVQGWNPYAVAFNADEDNVRLVFKNPGMED 540
+ +QT+Y GW+ YA AF A D V LV NPG+E+
Sbjct: 129 EWGVLPMQTIYGSNGWDSYAWAFKAKMDEVALVIHNPGVEE 169
Score = 51.6 bits (122), Expect(2) = 4e-35
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 90 AAPEEDGLVPNGDFEASPSNGFPSEATIIEGPSEVPSWKSNGTVELVESGQK 245
AA DGL+PNG+FE P T++ G + +P W+++G VE +ESG K
Sbjct: 20 AAVVTDGLLPNGNFEEGPPKSDLVNGTVVRGANAIPRWETSGFVEYIESGHK 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,114,700
Number of Sequences: 1393205
Number of extensions: 11836740
Number of successful extensions: 31673
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 30639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31645
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
