Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002733A_C01 KMC002733A_c01
(822 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF79236.1|AC006917_21 F10B6.25 [Arabidopsis thaliana] 201 8e-51
ref|NP_172938.1| nucleoporin, putative; protein id: At1g14850.1 ... 197 2e-49
gb|AAN05341.1| Putative non-LTR retroelement reverse transcripta... 41 0.024
ref|NP_062019.1| bassoon [Rattus norvegicus] gi|11360395|pir||T4... 36 0.60
ref|NP_794573.1| conserved hypothetical protein [Pseudomonas syr... 34 2.3
>gb|AAF79236.1|AC006917_21 F10B6.25 [Arabidopsis thaliana]
Length = 1475
Score = 201 bits (512), Expect = 8e-51
Identities = 110/176 (62%), Positives = 137/176 (77%), Gaps = 15/176 (8%)
Frame = -2
Query: 821 GAVLPLDIICLHLEKAGLERLNSGVEPVGDEDVARALVSACKGSAEPVLNAYDQLLSNGA 642
G VLPLD++CLHLE+A LER + +E V DED+A+AL++ACKG+AEPVLNAYD+LLSN A
Sbjct: 1303 GVVLPLDVLCLHLERAALER-SERIENVRDEDIAKALLAACKGAAEPVLNAYDRLLSNAA 1361
Query: 641 ILPSPNLRLRLLRSVLVILREWATSVYSHRMGIGASPSR---VLEGGFSLERTVA-SQGI 474
++PSPNLR+RLLRSVLV+LREWA SV S RM G+SP+R +L G F+LE A +QG
Sbjct: 1362 VVPSPNLRIRLLRSVLVVLREWAMSVLSDRM--GSSPTRSSLILGGSFALENKAALNQGA 1419
Query: 473 RDKITSAANR-----------YMTEVRRLALPQNQTEVVYRGFRELEESVISPHSF 339
RDKI +AANR YMTEVRRLALP N+T+ VY GF+EL+ES++SP SF
Sbjct: 1420 RDKIANAANRQVCLCHFVSIWYMTEVRRLALPPNKTDGVYAGFKELDESLLSPFSF 1475
>ref|NP_172938.1| nucleoporin, putative; protein id: At1g14850.1 [Arabidopsis thaliana]
Length = 1461
Score = 197 bits (500), Expect = 2e-49
Identities = 106/165 (64%), Positives = 134/165 (80%), Gaps = 4/165 (2%)
Frame = -2
Query: 821 GAVLPLDIICLHLEKAGLERLNSGVEPVGDEDVARALVSACKGSAEPVLNAYDQLLSNGA 642
G VLPLD++CLHLE+A LER + +E V DED+A+AL++ACKG+AEPVLNAYD+LLSN A
Sbjct: 1303 GVVLPLDVLCLHLERAALER-SERIENVRDEDIAKALLAACKGAAEPVLNAYDRLLSNAA 1361
Query: 641 ILPSPNLRLRLLRSVLVILREWATSVYSHRMGIGASPSR---VLEGGFSLERTVA-SQGI 474
++PSPNLR+RLLRSVLV+LREWA SV S RM G+SP+R +L G F+LE A +QG
Sbjct: 1362 VVPSPNLRIRLLRSVLVVLREWAMSVLSDRM--GSSPTRSSLILGGSFALENKAALNQGA 1419
Query: 473 RDKITSAANRYMTEVRRLALPQNQTEVVYRGFRELEESVISPHSF 339
RDKI +AANR +VRRLALP N+T+ VY GF+EL+ES++SP SF
Sbjct: 1420 RDKIANAANR---QVRRLALPPNKTDGVYAGFKELDESLLSPFSF 1461
>gb|AAN05341.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)]
Length = 603
Score = 40.8 bits (94), Expect = 0.024
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 821 GAVLPLDIICLHLEKAGLERLNS 753
G+ LPLDIICLHLEKA L+RL+S
Sbjct: 578 GSCLPLDIICLHLEKAALDRLSS 600
>ref|NP_062019.1| bassoon [Rattus norvegicus] gi|11360395|pir||T42761 Bassoon protein -
rat gi|3413504|emb|CAA76287.1| Bassoon [Rattus
norvegicus]
Length = 3938
Score = 36.2 bits (82), Expect = 0.60
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Frame = +1
Query: 487 ATVRSNENPPSSTREGEAPIPILWEYTDVAHSRSITRTDLNKRNLRFGDGKIAPFDNN*S 666
+T+ S PP++ G + + A S +R ++ L GDG++ P +
Sbjct: 1407 STIHSYGQPPTTANYGSQTEELPHAPSGPAGSGRASR----EKPLSGGDGEVGPPQPSRG 1462
Query: 667 YAFRTGSAEPLQAETRALATSSSPT----GSTPEFNLSSPAFS 783
Y++ TGS+ PL T + + + SP+ +T EF+ +P+ +
Sbjct: 1463 YSYFTGSSPPLSPSTPSESPTFSPSKLGPRATAEFSTQTPSLT 1505
>ref|NP_794573.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000] gi|28855207|gb|AAO58268.1| conserved
hypothetical protein [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 359
Score = 34.3 bits (77), Expect = 2.3
Identities = 45/163 (27%), Positives = 74/163 (44%), Gaps = 10/163 (6%)
Frame = +1
Query: 325 YQNRLNE*GLITDSSSSLKPRYTTSVWFCGRASLLTSVIYLFAALVI---LSRIPWLATV 495
++NR G T ++S+K R F RA +IYL ALV+ S+ P L V
Sbjct: 4 WKNRAGSAGERTADTASVKRRGYLGNLFYSRALGALILIYLLVALVVGWYWSKEPALFPV 63
Query: 496 RSNENPPSSTREGEAPIPILWEYTDVAHSRSITRTDLNKRNLRFGDGKIAP---FDNN*S 666
+ N ++ REG+ I+ YT V +++ T L+KR + ++ P DN S
Sbjct: 64 QQNAQ-AAAEREGK---QIVIGYTTVETLKTVAGTLLDKRGGYLSNDRMPPGLWLDNIPS 119
Query: 667 YAFRTGSAEPLQAETRAL----ATSSSPTGSTPEFNLSSPAFS 783
+ + G ++ +RAL A S S + + + P F+
Sbjct: 120 WEY--GVLVQVRDLSRALRKDFARSQSQSAEDGDLARAEPLFN 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,901,681
Number of Sequences: 1393205
Number of extensions: 14528046
Number of successful extensions: 35416
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 34114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35392
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42576939184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
