Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002729A_C01 KMC002729A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00104604.1| hypothetical protein [Prochlorococcus marinus ... 32 5.2
ref|NP_446188.1| caspase 11 [Rattus norvegicus] gi|13876576|gb|A... 31 6.9
ref|NP_180922.1| hypothetical protein; protein id: At2g33640.1 [... 31 6.9
ref|NP_602601.1| Sodium/glutamate symport carrier protein [Fusob... 31 6.9
gb|AAM76752.1| hypothetical protein [Arabidopsis thaliana] 31 6.9
>gb|ZP_00104604.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 337
Score = 31.6 bits (70), Expect = 5.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -1
Query: 213 STVPYSTFGSASISLESILKPEAIHQSFFPELILTLGSIVEEFPNLHVCHCFCT 52
ST+ GS +I S LKP + P+LI +E P L V CFC+
Sbjct: 191 STIAGEPIGSINIKYVSNLKPFKVEGDILPKLI-------DEIPILAVAACFCS 237
>ref|NP_446188.1| caspase 11 [Rattus norvegicus] gi|13876576|gb|AAK38735.1| caspase
11 [Rattus norvegicus]
Length = 373
Score = 31.2 bits (69), Expect = 6.9
Identities = 17/59 (28%), Positives = 32/59 (53%)
Frame = +1
Query: 235 ER*CSRNFLKIKKEEKKKNCNYR*RTQTQRNLRELVWLGITRNKHRKLGTSM*STLLKI 411
E+ N LK+K+EEK+K N +R+ + V++ + + KH ++G + T L +
Sbjct: 27 EKLVQSNVLKLKEEEKQKFNN------AERSDKRWVFVDVLKRKHNQVGKMLLQTFLNV 79
>ref|NP_180922.1| hypothetical protein; protein id: At2g33640.1 [Arabidopsis
thaliana] gi|25408296|pir||A84748 hypothetical protein
At2g33640 [imported] - Arabidopsis thaliana
gi|2459444|gb|AAB80679.1| hypothetical protein
[Arabidopsis thaliana]
Length = 567
Score = 31.2 bits (69), Expect = 6.9
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = -1
Query: 408 FQQGRSHRGAQLPVFVPGYSQ 346
FQQ RS RG QLPVF+P SQ
Sbjct: 537 FQQVRSQRGDQLPVFMPTDSQ 557
>ref|NP_602601.1| Sodium/glutamate symport carrier protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586] gi|19713033|gb|AAL93900.1|
Sodium/glutamate symport carrier protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 413
Score = 31.2 bits (69), Expect = 6.9
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 369 VFVPGYSQPNQFS*ISLSLSPSPVIAIFFLLFLLYFQEIPRTLSFTLKCLFCSTVPYSTF 190
+ + GYS + + ++ P+PV+ F +FL + I T F + +F ST + F
Sbjct: 26 LLIMGYSINKRLTILNKYCIPAPVVGGFIFMFLTWLGHISGTFKFNFENIFQSTFMLAFF 85
Query: 189 GSASI 175
+ +
Sbjct: 86 TTVGL 90
>gb|AAM76752.1| hypothetical protein [Arabidopsis thaliana]
Length = 565
Score = 31.2 bits (69), Expect = 6.9
Identities = 15/21 (71%), Positives = 16/21 (75%)
Frame = -1
Query: 408 FQQGRSHRGAQLPVFVPGYSQ 346
FQQ RS RG QLPVF+P SQ
Sbjct: 535 FQQVRSQRGDQLPVFMPTDSQ 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,791,992
Number of Sequences: 1393205
Number of extensions: 8356677
Number of successful extensions: 20100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20090
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
