Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002723A_C01 KMC002723A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_230214.1| similar to olfactory receptor MOR225-5 [Mus mus... 35 0.94
ref|XP_141187.1| similar to olfactory receptor MOR225-5 [Mus mus... 34 1.2
gb|AAL61297.1| olfactory receptor MOR225-5 [Mus musculus] 34 1.6
ref|NP_618953.1| conserved hypothetical protein [Methanosarcina ... 33 2.1
ref|XP_141189.1| similar to olfactory receptor MOR225-5 [Mus mus... 32 6.1
>ref|XP_230214.1| similar to olfactory receptor MOR225-5 [Mus musculus] [Rattus
norvegicus]
Length = 272
Score = 34.7 bits (78), Expect = 0.94
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 84 ILATIS-SMVVDQPFFYCICITKMLNLYYVYLYFPNRSIYLASTKKRIWY---ITQL 242
IL TI+ S +++QP +Y +C +++L Y P LA+T+K I Y +TQL
Sbjct: 6 ILVTITCSHLIEQPMYYFLCHLSLMDLCYTSTVIPRLIRDLAATRKNISYNECMTQL 62
>ref|XP_141187.1| similar to olfactory receptor MOR225-5 [Mus musculus]
Length = 277
Score = 34.3 bits (77), Expect = 1.2
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 84 ILATIS-SMVVDQPFFYCICITKMLNLYYVYLYFPNRSIYLASTKKRIWY---ITQL 242
IL TI+ S +++QP +Y +C +++L Y P LA+T+K I Y +TQL
Sbjct: 6 ILLTITCSHLIEQPMYYFLCHLSLMDLCYTSTVIPRLIRDLAATRKNISYNECMTQL 62
>gb|AAL61297.1| olfactory receptor MOR225-5 [Mus musculus]
Length = 321
Score = 33.9 bits (76), Expect = 1.6
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +3
Query: 84 ILATIS-SMVVDQPFFYCICITKMLNLYYVYLYFPNRSIYLASTKKRIWY---ITQL 242
IL TI+ S +++QP +Y +C +++L Y P LA+T+K I Y +TQL
Sbjct: 50 ILFTITYSHLIEQPMYYFLCHLSLMDLCYTSTVIPRLVRDLATTRKNISYNECMTQL 106
>ref|NP_618953.1| conserved hypothetical protein [Methanosarcina acetivorans str.
C2A] gi|19918185|gb|AAM07433.1| conserved hypothetical
protein [Methanosarcina acetivorans str. C2A]
Length = 559
Score = 33.5 bits (75), Expect = 2.1
Identities = 15/41 (36%), Positives = 23/41 (55%)
Frame = +3
Query: 165 YVYLYFPNRSIYLASTKKRIWYITQLVFRASSAFGMLMWLY 287
+ YL+ S+ LA T K Y+ L+F A + G+L W+Y
Sbjct: 180 FPYLFLTASSLALAVTAKENAYVIILIFGAYAGMGLLYWIY 220
>ref|XP_141189.1| similar to olfactory receptor MOR225-5 [Mus musculus]
Length = 299
Score = 32.0 bits (71), Expect = 6.1
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 87 LATISSMVVDQPFFYCICITKMLNLYYVYLYFPNRSIYLASTKKRIWY---ITQL 242
L S +++QP +Y +C +++L Y P LA+T+K I Y +TQL
Sbjct: 8 LTITCSHLIEQPMYYFLCHLSLMDLCYPSTVIPRLIRDLAATRKNISYNECMTQL 62
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,702,514
Number of Sequences: 1393205
Number of extensions: 9386688
Number of successful extensions: 21944
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21921
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
