Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002722A_C01 KMC002722A_c01
(745 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567691.1| FtsH protease, putative; protein id: At4g23940.... 89 5e-17
gb|EAA38694.1| GLP_516_32988_35969 [Giardia lamblia ATCC 50803] 35 1.5
gb|AAD52701.1|AF091540_1 cysteine dioxygenase [Schistosoma japon... 34 1.9
ref|XP_242331.1| hypothetical protein XP_242331 [Rattus norvegicus] 33 4.3
ref|NP_781876.1| chromosome segregation protein smc2 [Clostridiu... 33 4.3
>ref|NP_567691.1| FtsH protease, putative; protein id: At4g23940.1 [Arabidopsis
thaliana] gi|7484842|pir||T08913 cell division protein
FtsH homolog T32A16.110 - Arabidopsis thaliana
gi|2262118|gb|AAB63626.1| cell division protein isolog
[Arabidopsis thaliana] gi|4972098|emb|CAB43894.1| cell
division protein-like [Arabidopsis thaliana]
gi|7269243|emb|CAB81312.1| cell division protein-like
[Arabidopsis thaliana]
Length = 946
Score = 89.4 bits (220), Expect = 5e-17
Identities = 45/70 (64%), Positives = 55/70 (78%)
Frame = -1
Query: 745 ICDMYGKTVSLLRRHHAALLKAVKVLLNQKEISGEELEFILNKYPPQTPLHLLEEEEDPG 566
I MY KTVSLLR++ ALLK VKVLLNQKEISGE ++FIL+ YPPQTPL+ L +E++PG
Sbjct: 858 ISQMYNKTVSLLRQNQTALLKTVKVLLNQKEISGEAIDFILDHYPPQTPLNSLLQEQNPG 917
Query: 565 NLLFSEEQER 536
+L F E R
Sbjct: 918 SLPFVPEHLR 927
>gb|EAA38694.1| GLP_516_32988_35969 [Giardia lamblia ATCC 50803]
Length = 993
Score = 34.7 bits (78), Expect = 1.5
Identities = 31/106 (29%), Positives = 50/106 (46%), Gaps = 3/106 (2%)
Frame = +3
Query: 342 KIEASNVALRADMSSEESVPSAISKSETLTGQESSNKYLVSKKD*ERTHMVSSSFE*VSN 521
++ S V A + S+ S I + + G S + S++ +H +S+ VS+
Sbjct: 565 QVSQSGVRGGATHTLASSIISGIGSAGSTNGLRKS--HASSRRGDSNSHRHTSTHLSVSS 622
Query: 522 AYTK---SRSCSSLKRRLPGSSSSSKRCKGVCGGYLFKMNSSSSPL 650
++TK S+S SLK+ G SSSK+ G + M S SPL
Sbjct: 623 SFTKLNASKSGKSLKKSTTGGKSSSKK---RAGSHRASMGKSKSPL 665
>gb|AAD52701.1|AF091540_1 cysteine dioxygenase [Schistosoma japonicum]
Length = 212
Score = 34.3 bits (77), Expect = 1.9
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Frame = -1
Query: 727 KTVSLLRRHHAALLKAVKVLLNQKEISGEELEFILN----------KYPPQTPLHLLEEE 578
KTVS L L+K ++++ NQKEI+ E+ ILN KY H
Sbjct: 16 KTVSTLND----LIKTIRIIFNQKEINVNEIHKILNDFQCDFTEWQKYIYFNKTHYTRNL 71
Query: 577 EDPGN-------LLFSEEQERDLVYALETHSKEEETI*VLSQSFFE-TKYLLLDSWPVSV 422
D GN L +SE+Q + H + + ++ FE KY ++ S+
Sbjct: 72 IDEGNGRYNLFLLCWSEDQGTRIHDHSGAHCFVKLIKGCIKETIFEWPKYFTVEKSNYSI 131
Query: 421 SDLEIALGTDSSEDMSARRATF 356
+ +++ L S +M T+
Sbjct: 132 NQIDLPLTVKSVSEMRPGDVTY 153
>ref|XP_242331.1| hypothetical protein XP_242331 [Rattus norvegicus]
Length = 781
Score = 33.1 bits (74), Expect = 4.3
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Frame = -1
Query: 649 SGEELEFILNKYPPQTPLH-LLEEEEDPGNLLFSEEQERDLVYALETHSKEEETI*VLSQ 473
SG+EL+++++ ++ LLE D +L+FS + + ALET +E+ ++
Sbjct: 294 SGDELQYVISSKNRRSKKQILLESSRDLYSLVFSSPLYKPSILALETGQREDVHDSDKAK 353
Query: 472 SFFETK-YLLLDSWPVSVSDLEIALGTDSSEDMSARRATFEASIFR*IYVFY 320
+ ++ +D W V V L++ S+ + + A EASI + V +
Sbjct: 354 HLGAVQGWMFMDLWFVEVCTLQVIHILSSAAHVGSPGAHGEASIAHRLIVLW 405
>ref|NP_781876.1| chromosome segregation protein smc2 [Clostridium tetani E88]
gi|28203371|gb|AAO35813.1| chromosome segregation
protein smc2 [Clostridium tetani E88]
Length = 1186
Score = 33.1 bits (74), Expect = 4.3
Identities = 22/76 (28%), Positives = 39/76 (50%), Gaps = 3/76 (3%)
Frame = -1
Query: 712 LRRHHAALLKAVKVLLNQKEISGEELEFILNKYPPQTPLHLLEEEEDPGNLLFSEEQERD 533
+ + + L +K+L N+KE +ELE + +EEE+ GNLL+ E+ + D
Sbjct: 745 IEKENLKLKDRMKILKNEKETLNKELED-----------YGKDEEENKGNLLYLEKTQND 793
Query: 532 ---LVYALETHSKEEE 494
++ LE K++E
Sbjct: 794 NEKKIHILENELKDKE 809
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,594,420
Number of Sequences: 1393205
Number of extensions: 13151381
Number of successful extensions: 35199
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 32517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34730
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
