Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002717A_C01 KMC002717A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK27157.1|AF349449_1 glutathione reductase [Brassica juncea] 33 5.0
ref|NP_660475.1| threonyl-tRNA synthetase [Buchnera aphidicola s... 32 6.5
>gb|AAK27157.1|AF349449_1 glutathione reductase [Brassica juncea]
Length = 564
Score = 32.7 bits (73), Expect = 5.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 514 VPDPPTSQQQIQTLFHFSELRPSKCNILPKRLYNIKAGAELFTLRSNDSN 663
+P PTS+ +TL H S LR ++ R Y+ + + F++R+ + N
Sbjct: 30 LPSSPTSRSLPKTLSHLSSLRLRAASVSNHRYYSSSSSSRRFSVRAQNDN 79
>ref|NP_660475.1| threonyl-tRNA synthetase [Buchnera aphidicola str. Sg (Schizaphis
graminum)] gi|22654285|sp|P46244|SYT_BUCAP Threonyl-tRNA
synthetase (Threonine--tRNA ligase) (ThrRS)
gi|21623017|gb|AAM67686.1| threonyl-tRNA synthetase
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 642
Score = 32.3 bits (72), Expect = 6.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 512 RFLIPQQVNNKFKHFSTSVSSDQANAIFSLRDCTTLRQVQ 631
R LI VNN F +F+T ++ D + + S +DC L ++
Sbjct: 33 RSLIAISVNNSFSNFNTLITEDSSISFISKKDCEALNIIR 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,248,146
Number of Sequences: 1393205
Number of extensions: 12823433
Number of successful extensions: 27010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26965
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
