Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002715A_C01 KMC002715A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T10862 phaseolin G-box binding protein PG2 - kidney bean (f... 31 3.2
ref|NP_101906.1| hypothetical protein [Mesorhizobium loti] gi|14... 31 4.2
ref|XP_224557.1| similar to nidogen 2 protein [Mus musculus] [Ra... 30 5.5
ref|XP_111618.1| hypothetical protein XP_111618 [Mus musculus] 30 7.2
ref|XP_155560.1| hypothetical protein XP_155560 [Mus musculus] 30 7.2
>pir||T10862 phaseolin G-box binding protein PG2 - kidney bean (fragment)
gi|1142621|gb|AAC28907.1| phaseolin G-box binding
protein PG2 [Phaseolus vulgaris]
Length = 614
Score = 31.2 bits (69), Expect = 3.2
Identities = 25/103 (24%), Positives = 43/103 (41%)
Frame = +2
Query: 95 PK*INK*RMLFGFPKSCMTQGSAWFPSSSNRNESRYSFLLNEESLLI*DFNIHILTPRAC 274
P +NK ++LF F + GS+W +S+++ E+ S L + + N TP
Sbjct: 173 PDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSTLWLNDPEVRDSINTAAATPSVS 232
Query: 275 FSSQPTRNLCIKPIHTSEGGVASFPAP*NTKSDAGAGLRTDTP 403
S P H S G++ ++ G+ T+TP
Sbjct: 233 VSVPP---------HNSTHGISKTMQLESSIQTPGSSTLTETP 266
>ref|NP_101906.1| hypothetical protein [Mesorhizobium loti]
gi|14021079|dbj|BAB47692.1| hypothetical protein
[Mesorhizobium loti]
Length = 228
Score = 30.8 bits (68), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 396 SVLRPAPASDLVFHGAGNDATPPSEVCMGLMQRL 295
S L P P+S L+ HG + PP +V GL+ +L
Sbjct: 144 SFLAPCPSSGLIIHGDADKVAPPKDV-QGLVDKL 176
>ref|XP_224557.1| similar to nidogen 2 protein [Mus musculus] [Rattus norvegicus]
Length = 238
Score = 30.4 bits (67), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (60%)
Frame = -3
Query: 138 LGKPNSILYLFIYFGVVRQSSMSHLLVNCAID*FIC 31
L P +L L ++ G++ +SS+ HL+ NC D IC
Sbjct: 30 LQHPERVLVLHLHSGII-ESSLCHLVQNCNCDKMIC 64
>ref|XP_111618.1| hypothetical protein XP_111618 [Mus musculus]
Length = 487
Score = 30.0 bits (66), Expect = 7.2
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Frame = +2
Query: 128 GFPKSCMTQGSAWFPSSSNRNESRYSFLLNEESLLI*DFNIHILTPRACFSSQPTRNLCI 307
G+P SC T FP NR + S LI D + + TP +CF S+ + N C
Sbjct: 137 GWPASCKTVLQPVFPLKGNRKVAPSP--AERRSPLIQDSRVAVDTPTSCFISKHS-NFCA 193
Query: 308 K----PIHTSEGGVASFP 349
+ P++ ++SFP
Sbjct: 194 QRSTLPVYPQ---ISSFP 208
>ref|XP_155560.1| hypothetical protein XP_155560 [Mus musculus]
Length = 501
Score = 30.0 bits (66), Expect = 7.2
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 4/78 (5%)
Frame = +2
Query: 128 GFPKSCMTQGSAWFPSSSNRNESRYSFLLNEESLLI*DFNIHILTPRACFSSQPTRNLCI 307
G+P SC T FP NR + S LI D + + TP +CF S+ + N C
Sbjct: 117 GWPASCKTVLQPVFPLKGNRKVAPSP--AERRSPLIQDSRVAVDTPTSCFISKHS-NFCA 173
Query: 308 K----PIHTSEGGVASFP 349
+ P++ ++SFP
Sbjct: 174 QRSTLPVYPQ---ISSFP 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 358,124,601
Number of Sequences: 1393205
Number of extensions: 7316671
Number of successful extensions: 14599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14582
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
