Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002713A_C01 KMC002713A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194945.2| putative protein; protein id: At4g32180.1, supp... 135 5e-31
gb|AAM52026.1| RE73673p [Drosophila melanogaster] 83 3e-15
ref|NP_608907.1| CG5828-PA [Drosophila melanogaster] gi|7296946|... 83 3e-15
pir||T05410 hypothetical protein F10M6.180 - Arabidopsis thalian... 82 6e-15
ref|NP_567984.1| putative protein; protein id: At4g35360.1, supp... 80 2e-14
>ref|NP_194945.2| putative protein; protein id: At4g32180.1, supported by cDNA:
gi_20466745 [Arabidopsis thaliana]
gi|20466746|gb|AAM20690.1| putative protein [Arabidopsis
thaliana]
Length = 870
Score = 135 bits (340), Expect = 5e-31
Identities = 63/73 (86%), Positives = 70/73 (95%)
Frame = -2
Query: 647 SPCIDLSQVSSELAAAAKGADLIILEGMGRSLHTNLNARFQCDALKLAMVKNQRLAEKLV 468
SPCIDL QVSSELAAAAK ADL++LEGMGR+LHTN NA+FQC+ALKLAMVKNQRLAEKL+
Sbjct: 795 SPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQCEALKLAMVKNQRLAEKLI 854
Query: 467 KGNIYDCVCKYEP 429
KGNIYDCVC+YEP
Sbjct: 855 KGNIYDCVCRYEP 867
>gb|AAM52026.1| RE73673p [Drosophila melanogaster]
Length = 389
Score = 83.2 bits (204), Expect = 3e-15
Identities = 40/75 (53%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Frame = -2
Query: 644 PCIDLSQVSSEL--AAAAKGADLIILEGMGRSLHTNLNARFQCDALKLAMVKNQRLAEKL 471
PC+D+ + EL A AA DL+++EGMGR+LHTNLNARF C+ LKLA++KN+ LA+ L
Sbjct: 312 PCLDMRTLPKELCDAIAANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYL 371
Query: 470 VKGNIYDCVCKYEPA 426
+++ VCK+EPA
Sbjct: 372 GGEDMFAVVCKFEPA 386
>ref|NP_608907.1| CG5828-PA [Drosophila melanogaster] gi|7296946|gb|AAF52219.1|
CG5828-PA [Drosophila melanogaster]
Length = 361
Score = 83.2 bits (204), Expect = 3e-15
Identities = 40/75 (53%), Positives = 56/75 (74%), Gaps = 2/75 (2%)
Frame = -2
Query: 644 PCIDLSQVSSEL--AAAAKGADLIILEGMGRSLHTNLNARFQCDALKLAMVKNQRLAEKL 471
PC+D+ + EL A AA DL+++EGMGR+LHTNLNARF C+ LKLA++KN+ LA+ L
Sbjct: 284 PCLDMRTLPKELCDAIAANETDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYL 343
Query: 470 VKGNIYDCVCKYEPA 426
+++ VCK+EPA
Sbjct: 344 GGEDMFAVVCKFEPA 358
>pir||T05410 hypothetical protein F10M6.180 - Arabidopsis thaliana
gi|2864625|emb|CAA16972.1| putative protein [Arabidopsis
thaliana] gi|7270122|emb|CAB79936.1| putative protein
[Arabidopsis thaliana]
Length = 838
Score = 82.0 bits (201), Expect = 6e-15
Identities = 38/47 (80%), Positives = 44/47 (92%)
Frame = -2
Query: 647 SPCIDLSQVSSELAAAAKGADLIILEGMGRSLHTNLNARFQCDALKL 507
SPCIDL QVSSELAAAAK ADL++LEGMGR+LHTN NA+FQC+ALK+
Sbjct: 792 SPCIDLRQVSSELAAAAKDADLVVLEGMGRALHTNFNAQFQCEALKV 838
>ref|NP_567984.1| putative protein; protein id: At4g35360.1, supported by cDNA:
206573., supported by cDNA: gi_17063178 [Arabidopsis
thaliana] gi|17063179|gb|AAL32984.1| unknown protein
[Arabidopsis thaliana] gi|23506025|gb|AAN28872.1|
At4g35360/F23E12_80 [Arabidopsis thaliana]
Length = 367
Score = 80.1 bits (196), Expect = 2e-14
Identities = 38/70 (54%), Positives = 53/70 (75%)
Frame = -2
Query: 644 PCIDLSQVSSELAAAAKGADLIILEGMGRSLHTNLNARFQCDALKLAMVKNQRLAEKLVK 465
P IDL++VS E+A + ADL+ILEGMGR + TNL A+F+CD+LK+ MVK+ +A+ +
Sbjct: 294 PVIDLARVSQEVAYLSSDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQ-FLG 352
Query: 464 GNIYDCVCKY 435
G +YDCV KY
Sbjct: 353 GRLYDCVIKY 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,569,456
Number of Sequences: 1393205
Number of extensions: 10163732
Number of successful extensions: 18509
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18500
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
