Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002712A_C01 KMC002712A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193976.1| hypothetical protein; protein id: At4g22450.1 [... 34 0.53
ref|NP_198312.1| putative protein [Arabidopsis thaliana] 34 0.53
pir||C96640 hypothetical protein T25B24.14 [imported] - Arabidop... 34 0.53
ref|NP_176346.1| En/Spm-like transposon protein, putative; prote... 34 0.53
gb|AAM46866.1|AF490375_1 isoamylase [Hordeum vulgare] 31 3.5
>ref|NP_193976.1| hypothetical protein; protein id: At4g22450.1 [Arabidopsis
thaliana] gi|7486611|pir||T05439 hypothetical protein
F7K2.30 - Arabidopsis thaliana
gi|3892701|emb|CAA22150.1| hypothetical protein
[Arabidopsis thaliana] gi|7269091|emb|CAB79200.1|
hypothetical protein [Arabidopsis thaliana]
Length = 457
Score = 33.9 bits (76), Expect = 0.53
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 313 ILIATMTIHNFIRRKSATDSDFMHFEDEDIPEQ 215
I+ +TM +HN+IR DSDF H+E + EQ
Sbjct: 387 IVTSTMALHNYIRDSQQEDSDFRHWEIVESYEQ 419
>ref|NP_198312.1| putative protein [Arabidopsis thaliana]
Length = 343
Score = 33.9 bits (76), Expect = 0.53
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 313 ILIATMTIHNFIRRKSATDSDFMHFEDEDIPEQ 215
I+ +TM +HN+IR DSDF H+E + EQ
Sbjct: 273 IVTSTMALHNYIRDSQQEDSDFRHWEIVESYEQ 305
>pir||C96640 hypothetical protein T25B24.14 [imported] - Arabidopsis thaliana
gi|4585884|gb|AAD25557.1|AC005850_14 Hypothetical
protein [Arabidopsis thaliana]
Length = 404
Score = 33.9 bits (76), Expect = 0.53
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 313 ILIATMTIHNFIRRKSATDSDFMHFEDEDIPEQ 215
I+ +TM +HN+IR DSDF H+E + EQ
Sbjct: 334 IVTSTMALHNYIRDSQQEDSDFRHWEIVESYEQ 366
>ref|NP_176346.1| En/Spm-like transposon protein, putative; protein id: At1g61510.1
[Arabidopsis thaliana]
Length = 608
Score = 33.9 bits (76), Expect = 0.53
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 313 ILIATMTIHNFIRRKSATDSDFMHFEDEDIPEQ 215
I+ +TM +HN+IR DSDF H+E + EQ
Sbjct: 538 IVTSTMALHNYIRDSQQEDSDFRHWEIVESYEQ 570
>gb|AAM46866.1|AF490375_1 isoamylase [Hordeum vulgare]
Length = 789
Score = 31.2 bits (69), Expect = 3.5
Identities = 21/64 (32%), Positives = 34/64 (52%)
Frame = -1
Query: 291 FITLFEGNQLLILISCTLKMKIYLNNDNDNQVGENPSITVASSTEMDFVRNSIRDQLLER 112
F+ +G L L+ T K L N DN+ GEN +++ E +F R+S++ +L +R
Sbjct: 542 FVCAHDGFTLADLV--TYNNKYNLPNGEDNRDGENHNLSWNCGEEGEFARSSVK-RLRKR 598
Query: 111 QCHN 100
Q N
Sbjct: 599 QMRN 602
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,609,136
Number of Sequences: 1393205
Number of extensions: 4909341
Number of successful extensions: 10999
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10984
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
