Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002708A_C01 KMC002708A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193696.2| RRM-containing protein; protein id: At4g19610.1... 74 2e-12
pir||T06154 hypothetical protein F24J7.162 - Arabidopsis thalian... 74 2e-12
gb|AAH04289.1|AAH04289 KIAA0682 gene product [Homo sapiens] gi|1... 65 1e-09
ref|NP_057280.1| KIAA0682 gene product [Homo sapiens] gi|7512883... 65 1e-09
ref|NP_055667.1| KIAA0682 gene product [Homo sapiens] gi|1312465... 65 1e-09
>ref|NP_193696.2| RRM-containing protein; protein id: At4g19610.1 [Arabidopsis
thaliana]
Length = 783
Score = 73.9 bits (180), Expect = 2e-12
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = -2
Query: 481 QIQSLRLPKK-FGSHRGFAFVEYGTQQEAQNALTGLLSTHLRGRSLVIERAKARESLDEL 305
QI+S+RLPKK G + G+AFVE+ T+QEA NA L STH GR LV+E A S++ +
Sbjct: 694 QIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDNSMEAI 753
Query: 304 RARTAAQFSEDNGFRNAFKLSK 239
R R+AA+F E+N K SK
Sbjct: 754 RKRSAAKFDEENDNARKRKSSK 775
>pir||T06154 hypothetical protein F24J7.162 - Arabidopsis thaliana
gi|4582489|emb|CAB40378.1| putative protein [Arabidopsis
thaliana] gi|7268757|emb|CAB78963.1| putative protein
[Arabidopsis thaliana]
Length = 772
Score = 73.9 bits (180), Expect = 2e-12
Identities = 41/82 (50%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Frame = -2
Query: 481 QIQSLRLPKK-FGSHRGFAFVEYGTQQEAQNALTGLLSTHLRGRSLVIERAKARESLDEL 305
QI+S+RLPKK G + G+AFVE+ T+QEA NA L STH GR LV+E A S++ +
Sbjct: 683 QIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDNSMEAI 742
Query: 304 RARTAAQFSEDNGFRNAFKLSK 239
R R+AA+F E+N K SK
Sbjct: 743 RKRSAAKFDEENDNARKRKSSK 764
>gb|AAH04289.1|AAH04289 KIAA0682 gene product [Homo sapiens]
gi|13544005|gb|AAH06137.1|AAH06137 Unknown (protein for
MGC:13068) [Homo sapiens]
Length = 960
Score = 64.7 bits (156), Expect = 1e-09
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = -2
Query: 481 QIQSLRLPKKF---GSHRGFAFVEYGTQQEAQNALTGLL-STHLRGRSLVIERAKARESL 314
+++++RLPKK G+HRGF FV++ T+Q+A+ A L STHL GR LV+E A + +L
Sbjct: 857 ELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTL 916
Query: 313 DELRARTAAQFSEDNGFRNAFKLSKKRKHISISD 212
LR +TAA F E + + L + + + SD
Sbjct: 917 QALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSD 950
>ref|NP_057280.1| KIAA0682 gene product [Homo sapiens] gi|7512883|pir||T17297
hypothetical protein DKFZp586F1023.1 - human
gi|5912081|emb|CAB55987.1| hypothetical protein [Homo
sapiens]
Length = 960
Score = 64.7 bits (156), Expect = 1e-09
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = -2
Query: 481 QIQSLRLPKKF---GSHRGFAFVEYGTQQEAQNALTGLL-STHLRGRSLVIERAKARESL 314
+++++RLPKK G+HRGF FV++ T+Q+A+ A L STHL GR LV+E A + +L
Sbjct: 857 ELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTL 916
Query: 313 DELRARTAAQFSEDNGFRNAFKLSKKRKHISISD 212
LR +TAA F E + + L + + + SD
Sbjct: 917 QALRQKTAAHFHEPPKKKRSVVLDEILEQLEGSD 950
>ref|NP_055667.1| KIAA0682 gene product [Homo sapiens] gi|13124658|sp|Q9Y4C8|K682_HUMAN
Probable RNA-binding protein KIAA0682
gi|3327178|dbj|BAA31657.1| KIAA0682 protein [Homo
sapiens]
Length = 960
Score = 64.7 bits (156), Expect = 1e-09
Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = -2
Query: 481 QIQSLRLPKKF---GSHRGFAFVEYGTQQEAQNALTGLL-STHLRGRSLVIERAKARESL 314
+++++RLPKK G+HRGF FV++ T+Q+A+ A L STHL GR LV+E A + +L
Sbjct: 857 ELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWADSEVTL 916
Query: 313 DELRARTAAQFSEDNGFRNAFKLSKKRKHISISD 212
LR +TAA F E + + L + + + SD
Sbjct: 917 QALRRKTAAHFHEPPKKKRSVVLDEILEQLEGSD 950
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,463,625
Number of Sequences: 1393205
Number of extensions: 11293262
Number of successful extensions: 31423
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 30167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31409
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
