Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002707A_C01 KMC002707A_c01
(434 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 ... 66 2e-12
ref|NP_496317.1| Predicted CDS, putative protein, with a coiled ... 35 0.21
pir||T25006 hypothetical protein T19E10.2 - Caenorhabditis elegans 35 0.21
gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus] 35 0.21
gb|ZP_00110302.1| hypothetical protein [Nostoc punctiforme] 35 0.28
>ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 [Arabidopsis
thaliana] gi|11265210|pir||T51523 clpB heat shock
protein-like - Arabidopsis thaliana
gi|9755800|emb|CAC01744.1| clpB heat shock protein-like
[Arabidopsis thaliana]
Length = 968
Score = 66.2 bits (160), Expect(2) = 2e-12
Identities = 33/40 (82%), Positives = 36/40 (89%), Gaps = 2/40 (5%)
Frame = +2
Query: 317 RGFSVRCEAS--NGRITQQEFTEMAWQAIVSSPEVAKENK 430
R F VRCEAS NGR+TQQEFTEMAWQ+IVSSP+VAKENK
Sbjct: 62 RPFVVRCEASSSNGRLTQQEFTEMAWQSIVSSPDVAKENK 101
Score = 25.8 bits (55), Expect(2) = 2e-12
Identities = 19/56 (33%), Positives = 23/56 (40%)
Frame = +1
Query: 163 VPISCNRDRARNSQHCQLSFPFSAIPISLKSLQLNQRHHLANGFHRIRRNPQGVLC 330
V + R + H Q S F A P S KSL+L Q L R+ P V C
Sbjct: 16 VSVGTETRRIYSFSHLQPSAAFPAKPSSFKSLKLKQSARLT---RRLDHRPFVVRC 68
>ref|NP_496317.1| Predicted CDS, putative protein, with a coiled coil-4 domain,
nematode specific [Caenorhabditis elegans]
gi|15718249|emb|CAA86787.2| Hypothetical protein
T19E10.2 [Caenorhabditis elegans]
Length = 225
Score = 35.0 bits (79), Expect = 0.21
Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Frame = +2
Query: 26 LLFSKPTQETEFTSLFNSTLFFPSTLASSRYH-RGWLLRRRFSFLIQFPFP-------AT 181
L F T + S F + FF L +H +L RFSF+ Q PFP +
Sbjct: 5 LFFHFSTSSSSIFSAFIPSFFFTFPLFFFIFHFSSFLPNPRFSFIFQCPFPLFIVSNISN 64
Query: 182 ETGLGILSTANSPSPFPQYPFPSNRFS*TRGTIWQMGFTEFEETLR 319
+ +G S F PF TRG +W M EE +R
Sbjct: 65 NSSIGHFKFQMSARSFLTQPFRPCSTGSTRG-LWPMPLQSEEERIR 109
>pir||T25006 hypothetical protein T19E10.2 - Caenorhabditis elegans
Length = 246
Score = 35.0 bits (79), Expect = 0.21
Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 8/106 (7%)
Frame = +2
Query: 26 LLFSKPTQETEFTSLFNSTLFFPSTLASSRYH-RGWLLRRRFSFLIQFPFP-------AT 181
L F T + S F + FF L +H +L RFSF+ Q PFP +
Sbjct: 5 LFFHFSTSSSSIFSAFIPSFFFTFPLFFFIFHFSSFLPNPRFSFIFQCPFPLFIVSNISN 64
Query: 182 ETGLGILSTANSPSPFPQYPFPSNRFS*TRGTIWQMGFTEFEETLR 319
+ +G S F PF TRG +W M EE +R
Sbjct: 65 NSSIGHFKFQMSARSFLTQPFRPCSTGSTRG-LWPMPLQSEEERIR 109
>gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
Length = 977
Score = 35.0 bits (79), Expect = 0.21
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 1/127 (0%)
Frame = +2
Query: 53 TEFTSLFNSTLFFPSTLASSRYHRGWLLRRRFSFLIQFPFPATETGLGILSTANSPSPFP 232
T T +LF +T+ +SR R RR FS + + A+ET +LS +
Sbjct: 3 TRRTPTLAKSLF--ATVTASRTSRSRSARRLFSAITR----ASETSPNVLSRSQVVDALA 56
Query: 233 QYPFPSNRFS*TRGTIWQMGFTE-FEETLRGFSVRCEASNGRITQQEFTEMAWQAIVSSP 409
S +F + FT F T S+R AS+ ++ Q EFT+MAW+ I+ +
Sbjct: 57 ANNVASAKFL-------SLSFTRSFHAT--NPSLRSAASS-QVAQTEFTDMAWEGILGAV 106
Query: 410 EVAKENK 430
+ A+ +K
Sbjct: 107 DAARISK 113
>gb|ZP_00110302.1| hypothetical protein [Nostoc punctiforme]
Length = 880
Score = 34.7 bits (78), Expect = 0.28
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 365 QEFTEMAWQAIVSSPEVAKENKH 433
++FTE AW+A+V +PE+AK+ +H
Sbjct: 7 EQFTEKAWEALVRTPEIAKQFQH 29
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 413,909,353
Number of Sequences: 1393205
Number of extensions: 9702102
Number of successful extensions: 27911
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27895
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
