Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002706A_C01 KMC002706A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK13162.1|AC078829_14 putative protein phosphatase 2A regula... 109 3e-23
gb|AAO42077.1| putative protein phosphatase 2A [Arabidopsis thal... 97 1e-19
ref|NP_171892.1| putative protein phosphatase 2A; protein id: At... 97 1e-19
ref|NP_198242.1| protein phosphatase 2A regulatory subunit B-lik... 96 2e-19
ref|NP_199222.1| protein phosphatase 2A 62 kDa B regulatory subu... 96 2e-19
>gb|AAK13162.1|AC078829_14 putative protein phosphatase 2A regulatory subunit [Oryza sativa
(japonica cultivar-group)]
Length = 578
Score = 109 bits (272), Expect = 3e-23
Identities = 49/59 (83%), Positives = 54/59 (91%)
Frame = -2
Query: 568 ISFETRDPFLIRQVREDPNMTEWDRFAHREYIRLSMEEDGEDMSNARGDVWEESLEAPF 392
++FETRDPFLIRQ RE+P +TEWDRFAHREYIRLSMEEDGED SN GDVW+ESLEAPF
Sbjct: 520 MAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDGEDASNGSGDVWDESLEAPF 578
>gb|AAO42077.1| putative protein phosphatase 2A [Arabidopsis thaliana]
gi|28827268|gb|AAO50478.1| putative protein phosphatase
2A [Arabidopsis thaliana]
Length = 529
Score = 97.1 bits (240), Expect = 1e-19
Identities = 43/59 (72%), Positives = 50/59 (83%)
Frame = -2
Query: 568 ISFETRDPFLIRQVREDPNMTEWDRFAHREYIRLSMEEDGEDMSNARGDVWEESLEAPF 392
++FETRDPFLIRQ REDPN+TEWDRFA REY RLSMEED +++SN DVW+E LE PF
Sbjct: 471 MAFETRDPFLIRQEREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLEPPF 529
>ref|NP_171892.1| putative protein phosphatase 2A; protein id: At1g03960.1
[Arabidopsis thaliana] gi|25406753|pir||E86170
hypothetical protein [imported] - Arabidopsis thaliana
gi|4204293|gb|AAD10674.1| Highly similar to protein
phosphatase 2A regulatory subunit [Arabidopsis thaliana]
Length = 534
Score = 97.1 bits (240), Expect = 1e-19
Identities = 43/59 (72%), Positives = 50/59 (83%)
Frame = -2
Query: 568 ISFETRDPFLIRQVREDPNMTEWDRFAHREYIRLSMEEDGEDMSNARGDVWEESLEAPF 392
++FETRDPFLIRQ REDPN+TEWDRFA REY RLSMEED +++SN DVW+E LE PF
Sbjct: 476 MAFETRDPFLIRQEREDPNLTEWDRFAQREYARLSMEEDVDEVSNGSADVWDEPLEPPF 534
>ref|NP_198242.1| protein phosphatase 2A regulatory subunit B-like protein; protein
id: At5g28900.1, supported by cDNA: gi_17380961,
supported by cDNA: gi_20465394 [Arabidopsis thaliana]
gi|17380962|gb|AAL36293.1| putative protein phosphatase
2A regulatory subunit B [Arabidopsis thaliana]
gi|20465395|gb|AAM20122.1| putative phosphatase 2A
regulatory subunit B protein [Arabidopsis thaliana]
Length = 536
Score = 96.3 bits (238), Expect = 2e-19
Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = -2
Query: 568 ISFETRDPFLIRQVREDPNMTEWDRFAHREYIRLSMEEDGEDMSNARGDVWEE-SLEAPF 392
++FETRDPFLIRQ RE+P +T+WDRFAHREYIRLSMEED ED SN +VW+E SLEAPF
Sbjct: 477 MAFETRDPFLIRQERENPTLTDWDRFAHREYIRLSMEEDVEDASNGSAEVWDESSLEAPF 536
>ref|NP_199222.1| protein phosphatase 2A 62 kDa B regulatory subunit (gb|AAD45158.1);
protein id: At5g44090.1, supported by cDNA: gi_20466174,
supported by cDNA: gi_5533378 [Arabidopsis thaliana]
gi|5533379|gb|AAD45158.1|AF165429_1 protein phosphatase
2A 62 kDa B'' regulatory subunit [Arabidopsis thaliana]
gi|9759510|dbj|BAB10976.1| protein phosphatase 2A 62 kDa
B'' regulatory subunit [Arabidopsis thaliana]
gi|20466175|gb|AAM20405.1| protein phosphatase 2A 62 kDa
B regulatory subunit [Arabidopsis thaliana]
gi|25083926|gb|AAN72135.1| protein phosphatase 2A 62 kDa
B regulatory subunit [Arabidopsis thaliana]
Length = 538
Score = 96.3 bits (238), Expect = 2e-19
Identities = 42/59 (71%), Positives = 51/59 (86%)
Frame = -2
Query: 568 ISFETRDPFLIRQVREDPNMTEWDRFAHREYIRLSMEEDGEDMSNARGDVWEESLEAPF 392
++FETRDPFLIRQ RE+P +TEWDRFA REY+RLSMEED E++SN DVW+E LE+PF
Sbjct: 480 MAFETRDPFLIRQERENPTLTEWDRFAQREYVRLSMEEDVEEVSNGSADVWDEPLESPF 538
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,530,935
Number of Sequences: 1393205
Number of extensions: 10549895
Number of successful extensions: 26298
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 24482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26109
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
