Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002703A_C01 KMC002703A_c01
(384 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB50195.1| pvc2 33 0.67
ref|NP_787909.1| unknown [Tropheryma whipplei str. Twist] gi|284... 33 1.1
ref|NP_789712.1| conserved hypothetical protein [Tropheryma whip... 33 1.1
gb|AAH29074.1| Unknown (protein for IMAGE:4214717) [Homo sapiens] 32 1.5
dbj|BAA74884.1| KIAA0861 protein [Homo sapiens] 32 1.5
>gb|AAB50195.1| pvc2
Length = 832
Score = 33.5 bits (75), Expect = 0.67
Identities = 24/107 (22%), Positives = 42/107 (38%), Gaps = 13/107 (12%)
Frame = +3
Query: 3 IIKITCVWL*TSNIQHKRYYKHSKVHSIYNNQENCYKREGLPNPMHLSLWPLVSSIGRVS 182
+ KI +L + YY +S I + C++ EG P S+W ++
Sbjct: 424 VYKIRFNFLKVKCLSTPEYYTNSYSREIAKSDWKCFEGEGCPVDGSYSIWDKSDTLSYDY 483
Query: 183 CIKE-------------WTKVF*RATTTEHSVLGKPTGIYNCNSNEF 284
C+KE W ++ +A +T +P + CNS +F
Sbjct: 484 CVKEFVFFSYCPATHYNWKRIIYKAIST------RPCVVRTCNSFKF 524
>ref|NP_787909.1| unknown [Tropheryma whipplei str. Twist] gi|28476790|gb|AAO44878.1|
unknown [Tropheryma whipplei str. Twist]
Length = 175
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 177 PFQLKKLGAINSNALDWGAPPACNNFLDYCKWNVLYCAC 61
P+++K L A+ ++AL GA P N L W++ YC C
Sbjct: 137 PYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYCDC 175
>ref|NP_789712.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28411065|emb|CAD67450.1| conserved hypothetical
protein [Tropheryma whipplei TW08/27]
Length = 162
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 177 PFQLKKLGAINSNALDWGAPPACNNFLDYCKWNVLYCAC 61
P+++K L A+ ++AL GA P N L W++ YC C
Sbjct: 124 PYRVKCLHALVAHALVTGANPVGNMALSAVNWSLRYCDC 162
>gb|AAH29074.1| Unknown (protein for IMAGE:4214717) [Homo sapiens]
Length = 275
Score = 32.3 bits (72), Expect = 1.5
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = +3
Query: 69 SKVHSIYNNQENCYKREGLPNPMHLSLWPLVSSIGRVSCIKEWTKVF*RATTTEHSVLGK 248
S++ + Q+N K +G P + + +S G + W K RATT++
Sbjct: 148 SEISKLLMEQQNNIKDQGNPQ------FEMSTSKGSGAGSGPWIKNMERATTSKEDPASS 201
Query: 249 PTGIYNCNSNEFHSRKT 299
GI C+S EF S T
Sbjct: 202 TGGIKGCSSREFSSMDT 218
>dbj|BAA74884.1| KIAA0861 protein [Homo sapiens]
Length = 982
Score = 32.3 bits (72), Expect = 1.5
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = +3
Query: 69 SKVHSIYNNQENCYKREGLPNPMHLSLWPLVSSIGRVSCIKEWTKVF*RATTTEHSVLGK 248
S++ + Q+N K +G P + + +S G + W K RATT++
Sbjct: 815 SEISKLLMEQQNNIKDQGNPQ------FEMSTSKGSGAGSGPWIKNMERATTSKEDPASS 868
Query: 249 PTGIYNCNSNEFHSRKT 299
GI C+S EF S T
Sbjct: 869 TGGIKGCSSREFSSMDT 885
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 388,953,351
Number of Sequences: 1393205
Number of extensions: 9215006
Number of successful extensions: 25853
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 24843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25849
length of database: 448,689,247
effective HSP length: 103
effective length of database: 305,189,132
effective search space used: 7324539168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
