Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002702A_C01 KMC002702A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194848.1| hypothetical protein; protein id: At4g31200.1 [... 85 1e-25
pir||T10673 hypothetical protein F6E21.110 - Arabidopsis thalian... 64 2e-09
gb|EAA11741.1| agCP6541 [Anopheles gambiae str. PEST] 37 0.19
gb|ZP_00018336.1| hypothetical protein [Chloroflexus aurantiacus] 32 4.7
ref|NP_566957.1| gamma response I protein; protein id: At3g52120... 32 6.2
>ref|NP_194848.1| hypothetical protein; protein id: At4g31200.1 [Arabidopsis
thaliana] gi|7486660|pir||T04487 hypothetical protein
F8F16.10 - Arabidopsis thaliana
gi|2827514|emb|CAA16523.1| predicted protein
[Arabidopsis thaliana] gi|7270022|emb|CAB79838.1|
predicted protein [Arabidopsis thaliana]
Length = 650
Score = 84.7 bits (208), Expect(2) = 1e-25
Identities = 40/46 (86%), Positives = 43/46 (92%)
Frame = -2
Query: 465 SGSGRLGLGATANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAITR 328
SGSGRLGLGATA+PNE +QYDDVYTSYRK RSTNYH+SMSARA TR
Sbjct: 605 SGSGRLGLGATADPNEPTQYDDVYTSYRKHRSTNYHTSMSARATTR 650
Score = 53.5 bits (127), Expect(2) = 1e-25
Identities = 22/26 (84%), Positives = 24/26 (91%)
Frame = -3
Query: 587 YERETPARKGGACIPPPANLQVDPET 510
YER++P RKGGACIPPP NLQVDPET
Sbjct: 568 YERDSPQRKGGACIPPPPNLQVDPET 593
>pir||T10673 hypothetical protein F6E21.110 - Arabidopsis thaliana
gi|7270021|emb|CAB79837.1| putative protein [Arabidopsis
thaliana]
Length = 114
Score = 63.5 bits (153), Expect = 2e-09
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -2
Query: 435 TANPNEVSQYDDVYTSYRKQRSTNYHSSMSARAITR 328
TA+PNE +QYD+VYTSYRK RSTNYH+SMSARA TR
Sbjct: 79 TADPNEPTQYDNVYTSYRKYRSTNYHTSMSARATTR 114
>gb|EAA11741.1| agCP6541 [Anopheles gambiae str. PEST]
Length = 767
Score = 37.0 bits (84), Expect = 0.19
Identities = 19/47 (40%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Frame = -2
Query: 471 GSSGSGRLGLGATANPNEVSQYD--DVYTSYRKQRSTNYHSSMSARA 337
G+ G R+GLGAT P Y+ D Y S+RK + + + M ARA
Sbjct: 719 GAMGGDRIGLGATIEPMRQEAYNPADPYESFRKNKGAAFITRMKARA 765
>gb|ZP_00018336.1| hypothetical protein [Chloroflexus aurantiacus]
Length = 770
Score = 32.3 bits (72), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (65%)
Frame = -1
Query: 520 IQRHGTYADGSVDRKSRVKWLGKVGAW 440
I RH +G +D +S+V+W G++G W
Sbjct: 495 ISRHEDLREGRIDLQSQVRWRGRLGLW 521
>ref|NP_566957.1| gamma response I protein; protein id: At3g52120.1, supported by
cDNA: gi_14335159, supported by cDNA: gi_20334807
[Arabidopsis thaliana] gi|14335160|gb|AAK59860.1|
AT3g52120/F4F15_230 [Arabidopsis thaliana]
gi|20334808|gb|AAM16265.1| AT3g52120/F4F15_230
[Arabidopsis thaliana]
Length = 443
Score = 32.0 bits (71), Expect = 6.2
Identities = 15/40 (37%), Positives = 22/40 (54%)
Frame = -2
Query: 480 VSPGSSGSGRLGLGATANPNEVSQYDDVYTSYRKQRSTNY 361
+ G + LG+GA+A P EV DD+Y Y+K+ Y
Sbjct: 390 IMAGDVKTNNLGVGASA-PGEVKPEDDIYEQYKKRMMLGY 428
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,551,134
Number of Sequences: 1393205
Number of extensions: 10886449
Number of successful extensions: 27824
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 26936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27807
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
