Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002701A_C01 KMC002701A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173488.1| nodule inception protein, putative; protein id:... 71 4e-13
ref|NP_177761.1| hypothetical protein; protein id: At1g76350.1 [... 69 3e-12
ref|NP_195253.1| putative protein; protein id: At4g35270.1 [Arab... 70 2e-11
gb|AAN41311.1| unknown protein [Arabidopsis thaliana] 67 2e-10
ref|NP_179306.1| unknown protein; protein id: At2g17150.1 [Arabi... 67 2e-10
>ref|NP_173488.1| nodule inception protein, putative; protein id: At1g20640.1,
supported by cDNA: gi_20259432 [Arabidopsis thaliana]
gi|25367430|pir||C86339 protein F2D10.12 [imported] -
Arabidopsis thaliana
gi|8778618|gb|AAF79626.1|AC027665_27 F5M15.4
[Arabidopsis thaliana]
gi|8886926|gb|AAF80612.1|AC069251_5 F2D10.12
[Arabidopsis thaliana] gi|20259433|gb|AAM14037.1|
putative nodule inception protein [Arabidopsis thaliana]
gi|21436131|gb|AAM51312.1| putative nodule inception
protein [Arabidopsis thaliana]
Length = 844
Score = 70.9 bits (172), Expect(2) = 4e-13
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = -3
Query: 340 KLDRRFNVSDMSKLDVKYLDDDLEWVLLTCDADLEECIDVCLSFESSTI 194
++ +RF++ DMS+ D+KYLD+D EWVLLTCD D+EEC+DVC + S TI
Sbjct: 772 EIGKRFSIEDMSRYDLKYLDEDNEWVLLTCDEDVEECVDVCRTTPSHTI 820
Score = 24.6 bits (52), Expect(2) = 4e-13
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 434 EDAHRLKVTYGDGKTRFRM 378
+D R+KV+YG+ K R RM
Sbjct: 742 DDFLRIKVSYGEEKIRLRM 760
>ref|NP_177761.1| hypothetical protein; protein id: At1g76350.1 [Arabidopsis
thaliana] gi|25367431|pir||A96791 hypothetical protein
F15M4.15 [imported] - Arabidopsis thaliana
gi|6554484|gb|AAF16666.1|AC012394_15 hypothetical
protein; 65318-62644 [Arabidopsis thaliana]
Length = 808
Score = 69.3 bits (168), Expect(2) = 3e-12
Identities = 28/49 (57%), Positives = 39/49 (79%)
Frame = -3
Query: 340 KLDRRFNVSDMSKLDVKYLDDDLEWVLLTCDADLEECIDVCLSFESSTI 194
++ +RF++ D+S+ D+KYLD+D EWVLL CD D+EEC+DVC SF TI
Sbjct: 738 EIAKRFSIEDVSRYDLKYLDEDNEWVLLRCDDDVEECVDVCRSFPGQTI 786
Score = 23.1 bits (48), Expect(2) = 3e-12
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = -2
Query: 461 KTCH-QPTPKEDAH-RLKVTYGDGKTRFRM 378
+T H P+ +ED R+KV+Y + K RF+M
Sbjct: 697 QTTHLSPSSQEDDFLRVKVSYEEEKIRFKM 726
>ref|NP_195253.1| putative protein; protein id: At4g35270.1 [Arabidopsis thaliana]
gi|7486018|pir||T06130 hypothetical protein F23E12.170 -
Arabidopsis thaliana gi|3080423|emb|CAA18742.1| putative
protein [Arabidopsis thaliana] gi|7270479|emb|CAB80244.1|
putative protein [Arabidopsis thaliana]
Length = 1031
Score = 69.7 bits (169), Expect = 2e-11
Identities = 30/49 (61%), Positives = 40/49 (81%)
Frame = -3
Query: 340 KLDRRFNVSDMSKLDVKYLDDDLEWVLLTCDADLEECIDVCLSFESSTI 194
++ RRFN+ +++ D+KYLDDD EWVLLTC+ADLEECID+ S +S TI
Sbjct: 900 EIARRFNIDNIAPFDLKYLDDDKEWVLLTCEADLEECIDIYRSSQSRTI 948
>gb|AAN41311.1| unknown protein [Arabidopsis thaliana]
Length = 909
Score = 66.6 bits (161), Expect = 2e-10
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Frame = -3
Query: 514 ARTHLLYTLKPSIKVTYSKPVTNQLQRRMLTD*KLHMEMEKPGFGCPR-RLEL*TSFA-- 344
ART T K + + S P+T + + + K FG R R L S+
Sbjct: 778 ARTQSHKTFKEPLVLDNSSPLTGSSNTSLRARGAIKV---KATFGEARIRFTLLPSWGFA 834
Query: 343 ---RKLDRRFNVSDMSKLDVKYLDDDLEWVLLTCDADLEECIDVCLSFESSTI 194
+++ RRFN+ D+S D+KYLDDD EWVLLTC+ADL ECID+ ++ TI
Sbjct: 835 ELKQEIARRFNIDDISWFDLKYLDDDKEWVLLTCEADLVECIDIYRLTQTHTI 887
>ref|NP_179306.1| unknown protein; protein id: At2g17150.1 [Arabidopsis thaliana]
gi|25367427|pir||F84548 hypothetical protein At2g17150
[imported] - Arabidopsis thaliana
Length = 890
Score = 66.6 bits (161), Expect = 2e-10
Identities = 44/113 (38%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Frame = -3
Query: 514 ARTHLLYTLKPSIKVTYSKPVTNQLQRRMLTD*KLHMEMEKPGFGCPR-RLEL*TSFA-- 344
ART T K + + S P+T + + + K FG R R L S+
Sbjct: 759 ARTQSHKTFKEPLVLDNSSPLTGSSNTSLRARGAIKV---KATFGEARIRFTLLPSWGFA 815
Query: 343 ---RKLDRRFNVSDMSKLDVKYLDDDLEWVLLTCDADLEECIDVCLSFESSTI 194
+++ RRFN+ D+S D+KYLDDD EWVLLTC+ADL ECID+ ++ TI
Sbjct: 816 ELKQEIARRFNIDDISWFDLKYLDDDKEWVLLTCEADLVECIDIYRLTQTHTI 868
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,066,760
Number of Sequences: 1393205
Number of extensions: 8890608
Number of successful extensions: 21107
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 20229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21012
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
