Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002698A_C02 KMC002698A_c02
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08573.1| gb|AAC80581.1~gene_id:MPK17.2~strong similarity ... 63 2e-09
ref|NP_568540.1| putative protein; protein id: At5g36740.1 [Arab... 63 2e-09
dbj|BAA97061.1| gb|AAC80581.1~gene_id:K15M2.12~similar to unknow... 62 4e-09
ref|NP_188116.1| PHD-finger protein, putative; protein id: At3g1... 62 4e-09
gb|AAK71545.1|AC087852_5 unknown protein [Oryza sativa (japonica... 60 2e-08
>dbj|BAB08573.1| gb|AAC80581.1~gene_id:MPK17.2~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 1188
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = -2
Query: 518 QGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNI 339
QG+CR LM IES L SLKV LVIP+VPE ++ WT F F VN+ KK I N+
Sbjct: 880 QGMCRRLMDGIESALGSLKVDKLVIPAVPELIDTWTSGFGFAPVND---SEKKTIKNLNL 936
Query: 338 LMFPRTMIMYKDL 300
L+FP ++ K L
Sbjct: 937 LVFPGVDMLGKSL 949
>ref|NP_568540.1| putative protein; protein id: At5g36740.1 [Arabidopsis thaliana]
Length = 1179
Score = 63.2 bits (152), Expect = 2e-09
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = -2
Query: 518 QGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNI 339
QG+CR LM IES L SLKV LVIP+VPE ++ WT F F VN+ KK I N+
Sbjct: 890 QGMCRRLMDGIESALGSLKVDKLVIPAVPELIDTWTSGFGFAPVND---SEKKTIKNLNL 946
Query: 338 LMFPRTMIMYKDL 300
L+FP ++ K L
Sbjct: 947 LVFPGVDMLGKSL 959
>dbj|BAA97061.1| gb|AAC80581.1~gene_id:K15M2.12~similar to unknown protein
[Arabidopsis thaliana]
Length = 1145
Score = 62.0 bits (149), Expect = 4e-09
Identities = 30/74 (40%), Positives = 47/74 (62%)
Frame = -2
Query: 518 QGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNI 339
QG+CR L+ IE L SLKV+ LV+ ++P VE WT+ F F +++ R+ K I N+
Sbjct: 910 QGMCRILVAAIEEMLMSLKVEKLVVAALPSLVETWTEGFGFKPMDDEERDALKRI---NL 966
Query: 338 LMFPRTMIMYKDLF 297
++FP T ++ K L+
Sbjct: 967 MVFPGTTLLKKTLY 980
>ref|NP_188116.1| PHD-finger protein, putative; protein id: At3g14980.1 [Arabidopsis
thaliana]
Length = 1189
Score = 62.0 bits (149), Expect = 4e-09
Identities = 30/74 (40%), Positives = 47/74 (62%)
Frame = -2
Query: 518 QGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNI 339
QG+CR L+ IE L SLKV+ LV+ ++P VE WT+ F F +++ R+ K I N+
Sbjct: 954 QGMCRILVAAIEEMLMSLKVEKLVVAALPSLVETWTEGFGFKPMDDEERDALKRI---NL 1010
Query: 338 LMFPRTMIMYKDLF 297
++FP T ++ K L+
Sbjct: 1011 MVFPGTTLLKKTLY 1024
>gb|AAK71545.1|AC087852_5 unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1324
Score = 60.1 bits (144), Expect = 2e-08
Identities = 30/78 (38%), Positives = 49/78 (62%)
Frame = -2
Query: 518 QGICRSLMKEIESFLCSLKVKTLVIPSVPETVEMWTQKFNFNEVNEVNREMKKEIYAHNI 339
QG+CR L+ IE L SL V+ L+IP++ E V+ WT KF F+ ++ K+E+ + ++
Sbjct: 1192 QGMCRRLLDGIEMILSSLNVEKLIIPAIAELVDTWTSKFGFSSLDV---SEKQEVKSTSM 1248
Query: 338 LMFPRTMIMYKDLFVRIS 285
L+FP T ++ K L + S
Sbjct: 1249 LVFPGTGLLQKPLLKKTS 1266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,282,992
Number of Sequences: 1393205
Number of extensions: 8460695
Number of successful extensions: 25018
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 24008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24985
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
