Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002695A_C04 KMC002695A_c04
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176440.1| similar to 14KD proline-rich protein DC2.15 pre... 180 1e-44
pir||S42552 proline-rich protein - rape gi|545029|gb|AAC60566.1|... 174 1e-42
pir||T09546 extensin like protein - black poplar gi|1199772|dbj|... 174 1e-42
gb|AAM47507.1| extensin-like protein [Citrus junos] 173 2e-42
ref|NP_172673.1| pEARLI 1-like protein; protein id: At1g12090.1,... 169 2e-41
>ref|NP_176440.1| similar to 14KD proline-rich protein DC2.15 precursor (sp|P14009);
similar to ESTs emb|Z17709 and emb|Z47685; protein id:
At1g62510.1 [Arabidopsis thaliana]
gi|25307714|pir||B96651 protein T3P18.7 [imported] -
Arabidopsis thaliana gi|5454193|gb|AAD43608.1|AC005698_7
T3P18.7 [Arabidopsis thaliana]
Length = 149
Score = 180 bits (456), Expect = 1e-44
Identities = 85/102 (83%), Positives = 91/102 (88%), Gaps = 1/102 (0%)
Frame = -2
Query: 593 PKPSPSPKPKPNPNPSPSSG-GSCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLLDG 417
PKP P+PKPKP P+PSPS CPRDALKLGVCANVLNGLLNVTLG+PPV PCCTL+ G
Sbjct: 44 PKPKPNPKPKPTPHPSPSPAIAKCPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQG 103
Query: 416 LVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVPR 291
L DLEAA CLCTALKANILGINLN+P+SLSLLLNVCSKKVPR
Sbjct: 104 LADLEAAACLCTALKANILGINLNIPLSLSLLLNVCSKKVPR 145
>pir||S42552 proline-rich protein - rape gi|545029|gb|AAC60566.1| proline-rich
SAC51 [Brassica napus]
Length = 147
Score = 174 bits (440), Expect = 1e-42
Identities = 82/101 (81%), Positives = 89/101 (87%)
Frame = -2
Query: 596 KPKPSPSPKPKPNPNPSPSSGGSCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLLDG 417
KPKP+P PKP P P PSP + CPRDALKLGVCANVL+GLLN+TLG+PPV PCCTL+ G
Sbjct: 43 KPKPNPKPKPTPTPTPSPVTA-KCPRDALKLGVCANVLSGLLNITLGKPPVKPCCTLIKG 101
Query: 416 LVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVP 294
L DLEAA CLCTALKANILGINLN+PISLSLLLNVCSKKVP
Sbjct: 102 LADLEAAACLCTALKANILGINLNIPISLSLLLNVCSKKVP 142
>pir||T09546 extensin like protein - black poplar gi|1199772|dbj|BAA11854.1|
extensin like protein [Populus nigra]
gi|1199774|dbj|BAA11855.1| extensin like protein
[Populus nigra]
Length = 141
Score = 174 bits (440), Expect = 1e-42
Identities = 79/104 (75%), Positives = 92/104 (87%), Gaps = 1/104 (0%)
Frame = -2
Query: 596 KPKPSPSPKPKPNPNPSPS-SGGSCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLLD 420
KPKP P PKPKP P P+PS SGG CP+DALKLGVCA++L LLNVT+G PPV PCC+++
Sbjct: 34 KPKPKPKPKPKPTPTPTPSPSGGKCPKDALKLGVCADLLGSLLNVTVGTPPVKPCCSVIQ 93
Query: 419 GLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVPRD 288
GL+DLEAAVCLCTA+KANILGINLN+P+SLSLLLNVC KKVP+D
Sbjct: 94 GLLDLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCGKKVPKD 137
>gb|AAM47507.1| extensin-like protein [Citrus junos]
Length = 143
Score = 173 bits (438), Expect = 2e-42
Identities = 82/98 (83%), Positives = 87/98 (88%)
Frame = -2
Query: 587 PSPSPKPKPNPNPSPSSGGSCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLLDGLVD 408
PSP PKPKP P PSPS G SCPRDALKLGVCANVLNGLLNVT+G PPV PCCTL+ GL D
Sbjct: 30 PSPKPKPKPKPTPSPS-GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLAD 88
Query: 407 LEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVP 294
LEAAVCLCTA+KANILGINLN+P+SLSLLLNVCSK P
Sbjct: 89 LEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKGCP 126
>ref|NP_172673.1| pEARLI 1-like protein; protein id: At1g12090.1, supported by cDNA:
5712., supported by cDNA: gi_16648817, supported by
cDNA: gi_20259412, supported by cDNA: gi_4063706
[Arabidopsis thaliana] gi|11278945|pir||T51717
extensin-like protein [imported] - Arabidopsis thaliana
gi|3157924|gb|AAC17607.1| Contains homology to
extensin-like protein gb|D83227 from Populus nigra.
ESTs gb|H76425, gb|T13883, gb|T45348, gb|H37743,
gb|AA042634, gb|Z26960 and gb|Z25951 come from this
gene. There is a similar ORF on the opposite strand.
[Arabidopsis thaliana] gi|4063707|gb|AAC98387.1|
extensin-like protein [Arabidopsis thaliana]
gi|16648818|gb|AAL25599.1| At1g12090/T28K15.14
[Arabidopsis thaliana] gi|20259413|gb|AAM14027.1|
putative pEARLI 1 [Arabidopsis thaliana]
gi|21436101|gb|AAM51297.1| putative pEARLI 1
[Arabidopsis thaliana]
Length = 137
Score = 169 bits (429), Expect = 2e-41
Identities = 80/99 (80%), Positives = 89/99 (89%), Gaps = 1/99 (1%)
Frame = -2
Query: 587 PSPSPKPKPNPNPSPSSGGS-CPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLLDGLV 411
PSP PKP P P PSPSSG S CP+D LKLGVCANVLNGLL++TLG+PPV PCC+L+ GL
Sbjct: 34 PSPKPKPTPKPTPSPSSGSSKCPKDTLKLGVCANVLNGLLDLTLGKPPVEPCCSLIQGLA 93
Query: 410 DLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKKVP 294
D+EAAVCLCTALKANILGINLNLPISLSLLLNVCSK++P
Sbjct: 94 DVEAAVCLCTALKANILGINLNLPISLSLLLNVCSKQLP 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,960,083
Number of Sequences: 1393205
Number of extensions: 12310735
Number of successful extensions: 104617
Number of sequences better than 10.0: 537
Number of HSP's better than 10.0 without gapping: 47085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85110
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
