Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002694A_C02 KMC002694A_c02
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565735.1| putative CCR4-associated factor; protein id: At... 194 1e-48
pir||F84728 probable CCR4-associated factor [imported] - Arabido... 194 1e-48
ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associat... 187 7e-47
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 168 6e-41
gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thal... 165 4e-40
>ref|NP_565735.1| putative CCR4-associated factor; protein id: At2g32070.1, supported
by cDNA: gi_15293024 [Arabidopsis thaliana]
gi|15293025|gb|AAK93623.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|20197620|gb|AAD15397.2|
putative CCR4-associated factor [Arabidopsis thaliana]
gi|23296713|gb|AAN13153.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 275
Score = 194 bits (492), Expect = 1e-48
Identities = 88/108 (81%), Positives = 101/108 (93%)
Frame = -1
Query: 602 HSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELL 423
HSGYDFGYLLKLLTC+ LPE+Q GFFE+I +YFP +YDIKHLMKFCN+LHGGLNKLAELL
Sbjct: 163 HSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELL 222
Query: 422 EVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSPEKYAGVLYGLGVEN 279
+V+RVG+CHQAGSDSLLTSCTFRKL++ +F GS EKY+GVLYGLGVEN
Sbjct: 223 DVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVEN 270
>pir||F84728 probable CCR4-associated factor [imported] - Arabidopsis thaliana
Length = 252
Score = 194 bits (492), Expect = 1e-48
Identities = 88/108 (81%), Positives = 101/108 (93%)
Frame = -1
Query: 602 HSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELL 423
HSGYDFGYLLKLLTC+ LPE+Q GFFE+I +YFP +YDIKHLMKFCN+LHGGLNKLAELL
Sbjct: 140 HSGYDFGYLLKLLTCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELL 199
Query: 422 EVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSPEKYAGVLYGLGVEN 279
+V+RVG+CHQAGSDSLLTSCTFRKL++ +F GS EKY+GVLYGLGVEN
Sbjct: 200 DVERVGICHQAGSDSLLTSCTFRKLQENFFIGSMEKYSGVLYGLGVEN 247
>ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associated factor, putative;
protein id: At1g80780.1, supported by cDNA: gi_17979380,
supported by cDNA: gi_20465784 [Arabidopsis thaliana]
gi|25363292|pir||D96840 hypothetical protein F23A5.13
[imported] - Arabidopsis thaliana
gi|6503290|gb|AAF14666.1|AC011713_14 Similar to
gb|U21855 CCR4-associated factor 1 (CAF1) from Mus
musculus. ESTs gb|AAA394972, gb|AA585812 and gb|H77015
come from this gene. [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|20465785|gb|AAM20381.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 274
Score = 187 bits (476), Expect = 7e-47
Identities = 86/108 (79%), Positives = 98/108 (90%)
Frame = -1
Query: 602 HSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELL 423
HSGYDFGYLLKLLTC+ LP+SQ FF+LI +YFP +YDIKHLMKFCN+LHGGLNKLAELL
Sbjct: 162 HSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELL 221
Query: 422 EVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSPEKYAGVLYGLGVEN 279
EV+RVG+CHQAGSDSLLTSCTFRKL++ +F G KY+GVLYGLGVEN
Sbjct: 222 EVERVGICHQAGSDSLLTSCTFRKLKENFFVGPLHKYSGVLYGLGVEN 269
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 168 bits (425), Expect = 6e-41
Identities = 78/110 (70%), Positives = 92/110 (82%)
Frame = -1
Query: 602 HSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELL 423
H GYDFGYL+KLLTC+ LP QA FF+L+ +YFP +YDIKHLM FCN L GGLN+LAEL+
Sbjct: 162 HGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELM 221
Query: 422 EVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSPEKYAGVLYGLGVENQT 273
V+RVG+CHQAGSDSLLT +FRKL++ YF GS EKY GVLYGLGVE+ T
Sbjct: 222 GVERVGICHQAGSDSLLTLGSFRKLKERYFPGSTEKYTGVLYGLGVEDGT 271
>gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thaliana]
Length = 277
Score = 165 bits (418), Expect = 4e-40
Identities = 77/110 (70%), Positives = 91/110 (82%)
Frame = -1
Query: 602 HSGYDFGYLLKLLTCRVLPESQAGFFELIKIYFPMLYDIKHLMKFCNNLHGGLNKLAELL 423
H GYDFGYL+KLLTC+ LP QA FF+L+ +YFP +YDIKHLM FCN L GGLN+LAEL+
Sbjct: 162 HGGYDFGYLVKLLTCKELPLKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELM 221
Query: 422 EVDRVGMCHQAGSDSLLTSCTFRKLRDTYFSGSPEKYAGVLYGLGVENQT 273
V+RVG+CHQAGSDSLLT +FRK ++ YF GS EKY GVLYGLGVE+ T
Sbjct: 222 GVERVGICHQAGSDSLLTLGSFRKPKERYFPGSTEKYTGVLYGLGVEDGT 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,382,452
Number of Sequences: 1393205
Number of extensions: 11397479
Number of successful extensions: 32954
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 30761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32903
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
