Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002692A_C05 KMC002692A_c05
(744 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB96777.1| NADH-ubiquinone oxidoreductase subunit 5 [Geomys ... 34 2.5
gb|AAD52873.1|AF142701_1 maturase-like protein [Vigna umbellata] 33 3.3
gb|ZP_00025912.1| hypothetical protein [Ralstonia metallidurans] 33 3.3
ref|XP_154508.1| hypothetical protein XP_154508 [Mus musculus] 33 3.3
ref|NP_148761.1| NADH dehydrogenase subunit 5 [Arctoscopus japon... 33 5.6
>gb|AAB96777.1| NADH-ubiquinone oxidoreductase subunit 5 [Geomys personatus]
Length = 599
Score = 33.9 bits (76), Expect = 2.5
Identities = 28/142 (19%), Positives = 57/142 (39%), Gaps = 10/142 (7%)
Frame = -1
Query: 738 NVTYCSLLTWILILAWLPHLFTRGQTKLAHHAQHSFNWVFLILGWSYKTSLCPPLELSFQ 559
N TY S + W I + +P + +K +IL W + T L++SF+
Sbjct: 30 NSTYTSTVKWAFITSMIPLMMYMNSSK-----------EIIILNWHWLTVHTIELKMSFK 78
Query: 558 QSLIAWLGFPIGHEIKWREL-LASWDSTQGIFCYYTPHPVTLLALHATLVLSFNMTVTS- 385
L + P+ + W + ++W + + PH L + +++ + VT+
Sbjct: 79 LDLYSITFMPVALYVTWSIMEYSTW------YMKHDPHLKRFLNYLSLFLITMLILVTAN 132
Query: 384 --------FPGLGLIDITLLAW 343
+ G+G++ L+ W
Sbjct: 133 NMFQLFIGWEGVGIMSFLLIGW 154
>gb|AAD52873.1|AF142701_1 maturase-like protein [Vigna umbellata]
Length = 504
Score = 33.5 bits (75), Expect = 3.3
Identities = 14/44 (31%), Positives = 29/44 (65%)
Frame = -1
Query: 132 YSTFYDGATCKVTFHPLEWIVSISCMDSITRKINKKIDKFYFKK 1
+S +Y+G+ K +F+ +++I+ SC+ ++ RK +K + Y KK
Sbjct: 411 FSHYYNGSAKKKSFYQIKYILRFSCIKTLARK-HKSTVRIYLKK 453
>gb|ZP_00025912.1| hypothetical protein [Ralstonia metallidurans]
Length = 416
Score = 33.5 bits (75), Expect = 3.3
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Frame = -1
Query: 453 PHPVTLLALHATLVLSFNMTVTSFPGLGLIDITLLAWIFLVAMR*PHFSIPEDKDV---- 286
P + L+ TL +F+ + + + L++ L A LV + H +P K +
Sbjct: 258 PLALALVDRARTLQTAFSQFIFAQIQISLVNTILTAIYLLVLLPLFHQHLPLSKTLVAIT 317
Query: 285 -FKGMVMVEGCILNGLAIATSFMGLQLPMPIIN*LLLFLCLFLVYYLD 145
G++ V G +++ AI + + + LP+ +++ L L L L Y+L+
Sbjct: 318 FIAGLLPVLGNLISNTAIVIASLSVSLPIAVVSLLFLVLIHKLEYFLN 365
>ref|XP_154508.1| hypothetical protein XP_154508 [Mus musculus]
Length = 266
Score = 33.5 bits (75), Expect = 3.3
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 714 TWILILAWLPHLFTRGQTKLAHHAQHSFNWVFLI 613
TW+++ W H + G L+ H +H W+ ++
Sbjct: 181 TWLIMCCWCEHCWRTGPAALSIHQEHPLEWIVIV 214
>ref|NP_148761.1| NADH dehydrogenase subunit 5 [Arctoscopus japonicus]
gi|14588616|dbj|BAB61808.1| NADH hydrogenase subunit 5
[Arctoscopus japonicus]
Length = 612
Score = 32.7 bits (73), Expect = 5.6
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = -1
Query: 618 LILGWSYKTSLCPPLELSFQQSLIAWLGFPIGHEIKWREL-LASW----DSTQGIFCYYT 454
++ W++ +LC + LSF+ + + PI + W L ASW D F Y
Sbjct: 67 IVTSWTWMNTLCFDISLSFKFDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYL 126
Query: 453 PHPVTLLALHATLVLSFNM--TVTSFPGLGLIDITLLAW 343
+ L TLV + NM + G+G++ L+ W
Sbjct: 127 ---LIFLISMITLVTANNMFQLFIGWEGVGIMSFLLIGW 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,256,419
Number of Sequences: 1393205
Number of extensions: 14542384
Number of successful extensions: 53344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 51729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53293
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
